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SMG8 SMG8 nonsense mediated mRNA decay factor [ Ailuropoda melanoleuca (giant panda) ]

Gene ID: 100466348, updated on 8-Mar-2024

Summary

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Gene symbol
SMG8
Gene description
SMG8 nonsense mediated mRNA decay factor
Locus tag
PANDA_012498
See related
Ensembl:ENSAMEG00000011619
Gene type
protein coding
RefSeq status
MODEL
Organism
Ailuropoda melanoleuca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ailuropoda
Orthologs
human mouse all
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Genomic context

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See SMG8 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
4
Annotation release Status Assembly Chr Location
103 current ASM200744v2 (GCF_002007445.1) 13 NC_048230.1 (13539335..13544427, complement)
102 previous assembly AilMel_1.0 (GCF_000004335.2) Unplaced Scaffold NW_003217972.1 (735608..740653, complement)

Chromosome 13 - NC_048230.1Genomic Context describing neighboring genes Neighboring gene yippee like 2 Neighboring gene glycerophosphodiester phosphodiesterase domain containing 1 Neighboring gene proline rich 11 Neighboring gene tripartite motif containing 37 Neighboring gene protein phosphatase, Mg2+/Mn2+ dependent 1E

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The sequence and de novo assembly of the giant panda genome. Li R, et al. Nature, 2010 Jan 21. PMID 20010809, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein SMG8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ailuropoda melanoleuca Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM200744v2 Primary Assembly

Genomic

  1. NC_048230.1 Reference ASM200744v2 Primary Assembly

    Range
    13539335..13544427 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002923324.4 → XP_002923370.1  protein SMG8

    See identical proteins and their annotated locations for XP_002923370.1

    UniProtKB/TrEMBL
    A0A7N5J849, D2HLV2
    Related
    ENSAMEP00000012215.1, ENSAMET00000012733.2
    Conserved Domains (1) summary
    pfam10220
    Location:44 → 985
    DUF2146; Uncharacterized conserved protein (DUF2146)
Nucleotide Protein
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