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U2AF2 U2 small nuclear RNA auxiliary factor 2 [ Pongo abelii (Sumatran orangutan) ]

Gene ID: 100460600, updated on 26-Mar-2024

Summary

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Gene symbol
U2AF2
Gene description
U2 small nuclear RNA auxiliary factor 2
Locus tag
CR201_G0054363
See related
Ensembl:ENSPPYG00000010429
Gene type
protein coding
RefSeq status
MODEL
Organism
Pongo abelii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
Orthologs
human mouse all
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Genomic context

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See U2AF2 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2) 20 NC_072005.2 (62167073..62186322)
RS_2023_04 previous assembly NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1) 19 NC_072004.1 (68548224..68567498)

Chromosome 20 - NC_072005.2Genomic Context describing neighboring genes Neighboring gene zinc finger protein 580 Neighboring gene zinc finger protein 581 Neighboring gene coiled-coil domain containing 106 Neighboring gene epsin 1 Neighboring gene vomeronasal 1 receptor ponPygV1R-ps1925 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables poly-pyrimidine tract binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pre-mRNA 3'-splice site binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U2-type prespliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U2AF complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of commitment complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nuclear speck IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
splicing factor U2AF 65 kDa subunit

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028885655.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

Genomic

  1. NC_072005.2 Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

    Range
    62167073..62186322
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024236967.3 → XP_024092735.1  splicing factor U2AF 65 kDa subunit isoform X1

    UniProtKB/TrEMBL
    A0A2J8R3L6
    Conserved Domains (1) summary
    TIGR01642
    Location:63 → 474
    U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor

  2. XM_024236968.3 → XP_024092736.1  splicing factor U2AF 65 kDa subunit isoform X2

    UniProtKB/TrEMBL
    A0A2J8R3M1, H2P090
    Related
    ENSPPYP00000011687.3
    Conserved Domains (1) summary
    TIGR01642
    Location:63 → 470
    U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
Nucleotide Protein
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