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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_032904.1 RefSeqGene
- Range
-
5001..25667
- Download
- GenBank, FASTA, Sequence Viewer (Graphics), LRG_623
mRNA and Protein(s)
-
NM_001012478.2 → NP_001012496.1 splicing factor U2AF 65 kDa subunit isoform b
See identical proteins and their annotated locations for NP_001012496.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) uses an alternate in-frame splice site compared to variant 1. The resulting isoform (b) has the same N- and C-termini but is shorter compared to isoform a.
- Source sequence(s)
-
AC008735, BC008740, BC030574
- Consensus CDS
-
CCDS46197.1
- UniProtKB/Swiss-Prot
-
P26368
- Related
- ENSP00000388475.1, ENST00000450554.6
- Conserved Domains (1) summary
-
- TIGR01642
Location:63 → 470
- U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
-
NM_007279.3 → NP_009210.1 splicing factor U2AF 65 kDa subunit isoform a
See identical proteins and their annotated locations for NP_009210.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (a).
- Source sequence(s)
-
AC008735, BC008740, BC030574, X64044
- Consensus CDS
-
CCDS12933.1
- UniProtKB/Swiss-Prot
-
P26368
- Related
- ENSP00000307863.3, ENST00000308924.8
- Conserved Domains (1) summary
-
- TIGR01642
Location:63 → 474
- U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p13 Primary Assembly
Genomic
-
NC_000019.10 Reference GRCh38.p13 Primary Assembly
- Range
-
55654132..55674716
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_006722994.2 → XP_006723057.1 splicing factor U2AF 65 kDa subunit isoform X2
- Related
- ENSP00000466935.1, ENST00000590551.1
- Conserved Domains (3) summary
-
- cd12230
Location:1 → 65
- RRM1_U2AF65; RNA recognition motif 1 found in U2 large nuclear ribonucleoprotein auxiliary factor U2AF 65 kDa subunit (U2AF65) and similar proteins
- cd12231
Location:95 → 171
- RRM2_U2AF65; RNA recognition motif 2 found in U2 large nuclear ribonucleoprotein auxiliary factor U2AF 65 kDa subunit (U2AF65) and similar proteins
- cd12232
Location:211 → 297
- RRM3_U2AF65; RNA recognition motif 3 found in U2 large nuclear ribonucleoprotein auxiliary factor U2AF 65 kDa subunit (U2AF65) and similar proteins
-
XM_011526410.1 → XP_011524712.1 splicing factor U2AF 65 kDa subunit isoform X1
- Conserved Domains (3) summary
-
- cd12230
Location:44 → 125
- RRM1_U2AF65; RNA recognition motif 1 found in U2 large nuclear ribonucleoprotein auxiliary factor U2AF 65 kDa subunit (U2AF65) and similar proteins
- cd12231
Location:155 → 231
- RRM2_U2AF65; RNA recognition motif 2 found in U2 large nuclear ribonucleoprotein auxiliary factor U2AF 65 kDa subunit (U2AF65) and similar proteins
- cd12232
Location:271 → 357
- RRM3_U2AF65; RNA recognition motif 3 found in U2 large nuclear ribonucleoprotein auxiliary factor U2AF 65 kDa subunit (U2AF65) and similar proteins