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TOX2 TOX high mobility group box family member 2 [ Pongo abelii (Sumatran orangutan) ]

Gene ID: 100460236, updated on 6-Jun-2024

Summary

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Gene symbol
TOX2
Gene description
TOX high mobility group box family member 2
Locus tag
CR201_G0038453
See related
Ensembl:ENSPPYG00000011025
Gene type
protein coding
RefSeq status
MODEL
Organism
Pongo abelii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 21
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2) 21 NC_072006.2 (48150907..48312182)
RS_2023_04 previous assembly NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1) 20 NC_072005.1 (42061748..42223014)

Chromosome 21 - NC_072006.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC129052121 Neighboring gene uncharacterized LOC129052122 Neighboring gene uncharacterized LOC129052124 Neighboring gene junctophilin 2 Neighboring gene uncharacterized LOC129052125 Neighboring gene oxidative stress responsive serine rich 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chromatin DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
TOX high mobility group box family member 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028885655.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

Genomic

  1. NC_072006.2 Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

    Range
    48150907..48312182
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009233608.4 → XP_009231883.2  TOX high mobility group box family member 2 isoform X2

    UniProtKB/TrEMBL
    A0A8I5TNW4
    Related
    ENSPPYP00000045673.1
    Conserved Domains (1) summary
    cd00084
    Location:246 → 311
    HMG-box; High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I ...

  2. XM_054541796.2 → XP_054397771.1  TOX high mobility group box family member 2 isoform X1

    UniProtKB/TrEMBL
    A0A8I5TNW4

  3. XM_024239175.2 → XP_024094943.1  TOX high mobility group box family member 2 isoform X3

    UniProtKB/TrEMBL
    A0A2J8XW11, A0A2J8XW15, K7EUQ9
    Related
    ENSPPYP00000024286.2
    Conserved Domains (1) summary
    cd00084
    Location:246 → 311
    HMG-box; High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I ...

RNA

  1. XR_008516943.2 RNA Sequence

  2. XR_008516944.2 RNA Sequence

  3. XR_008516941.2 RNA Sequence

Nucleotide Protein
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Research Materials