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ADAR adenosine deaminase RNA specific [ Pongo abelii (Sumatran orangutan) ]

Gene ID: 100457633, updated on 6-Jun-2024

Summary

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Gene symbol
ADAR
Gene description
adenosine deaminase RNA specific
Locus tag
CR201_G0019100
See related
Ensembl:ENSPPYG00000000776
Gene type
protein coding
RefSeq status
MODEL
Organism
Pongo abelii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
Orthologs
human mouse all
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Genomic context

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See ADAR in Genome Data Viewer
Location:
chromosome: 1
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2) 1 NC_071985.2 (95950442..95997075)
RS_2023_04 previous assembly NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1) 1 NC_071985.1 (95950421..95997043)

Chromosome 1 - NC_071985.2Genomic Context describing neighboring genes Neighboring gene phosphomevalonate kinase Neighboring gene potassium calcium-activated channel subfamily N member 3 Neighboring gene uncharacterized LOC134762024 Neighboring gene cholinergic receptor nicotinic beta 2 subunit Neighboring gene ubiquitin conjugating enzyme E2 Q1 Neighboring gene tudor domain containing 10

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables double-stranded RNA adenosine deaminase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables double-stranded RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tRNA-specific adenosine deaminase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in adenosine to inosine editing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
double-stranded RNA-specific adenosine deaminase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028885655.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

Genomic

  1. NC_071985.2 Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

    Range
    95950442..95997075
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063727453.1 → XP_063583523.1  double-stranded RNA-specific adenosine deaminase isoform X5

    UniProtKB/TrEMBL
    A0A2J8VG15

  2. XM_054552494.2 → XP_054408469.1  double-stranded RNA-specific adenosine deaminase isoform X3

    UniProtKB/TrEMBL
    A0A2J8VG15

  3. XM_054552480.2 → XP_054408455.1  double-stranded RNA-specific adenosine deaminase isoform X1

    UniProtKB/TrEMBL
    A0A2J8VG15

  4. XM_054552485.2 → XP_054408460.1  double-stranded RNA-specific adenosine deaminase isoform X2

    UniProtKB/TrEMBL
    A0A2J8VG15

  5. XM_024245647.3 → XP_024101415.1  double-stranded RNA-specific adenosine deaminase isoform X4

    UniProtKB/TrEMBL
    A0A2J8VG03, A0A2J8VG15, H2N5K5
    Related
    ENSPPYP00000000904.3
    Conserved Domains (3) summary
    smart00358
    Location:504 → 569
    DSRM; Double-stranded RNA binding motif
    smart00552
    Location:839 → 1222
    ADEAMc; tRNA-specific and double-stranded RNA adenosine deaminase (RNA-specific editase)
    pfam02295
    Location:135 → 201
    z-alpha; Adenosine deaminase z-alpha domain

  6. XM_024245653.3 → XP_024101421.1  double-stranded RNA-specific adenosine deaminase isoform X6

    UniProtKB/TrEMBL
    A0A2J8VG15
    Conserved Domains (3) summary
    smart00358
    Location:504 → 569
    DSRM; Double-stranded RNA binding motif
    smart00552
    Location:813 → 1196
    ADEAMc; tRNA-specific and double-stranded RNA adenosine deaminase (RNA-specific editase)
    pfam02295
    Location:135 → 201
    z-alpha; Adenosine deaminase z-alpha domain
Nucleotide Protein
Heading Accession and Version

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