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TSPAN5 tetraspanin 5 [ Pongo abelii (Sumatran orangutan) ]

Gene ID: 100447170, updated on 6-Jun-2024

Summary

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Gene symbol
TSPAN5
Gene description
tetraspanin 5
Locus tag
CR201_G0033029
See related
Ensembl:ENSPPYG00000014943
Gene type
protein coding
RefSeq status
MODEL
Organism
Pongo abelii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 3
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2) 3 NC_071988.2 (119949660..120183944, complement)
RS_2023_04 previous assembly NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1) 4 NC_071989.1 (119988860..120221213, complement)

Chromosome 3 - NC_071988.2Genomic Context describing neighboring genes Neighboring gene sperm tail PG-rich repeat containing 2 Neighboring gene large ribosomal subunit protein uL18-like Neighboring gene Rap1 GTPase-GDP dissociation stimulator 1 Neighboring gene U2 spliceosomal RNA Neighboring gene uncharacterized LOC134761292 Neighboring gene uncharacterized LOC129059036 Neighboring gene transcription factor BTF3-like Neighboring gene uncharacterized LOC129059037

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tetraspanin-5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028885655.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

Genomic

  1. NC_071988.2 Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

    Range
    119949660..120183944 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054554216.2 → XP_054410191.1  tetraspanin-5 isoform X3

    UniProtKB/TrEMBL
    A0A8I5U6D5

  2. XM_024245874.3 → XP_024101642.1  tetraspanin-5 isoform X7

    Conserved Domains (1) summary
    cd03159
    Location:64 → 184
    TM4SF9_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF9_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment ...

  3. XM_002814986.6 → XP_002815032.1  tetraspanin-5 isoform X1

    See identical proteins and their annotated locations for XP_002815032.1

    UniProtKB/TrEMBL
    A0A663DJ51, A0A8I5U6D5, A0A8I5YJK6
    Related
    ENSPPYP00000026060.1
    Conserved Domains (2) summary
    cd03159
    Location:113 → 233
    TM4SF9_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF9_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment ...
    pfam00335
    Location:15 → 257
    Tetraspannin; Tetraspanin family

  4. XM_054554217.2 → XP_054410192.1  tetraspanin-5 isoform X6

  5. XM_009240207.4 → XP_009238482.1  tetraspanin-5 isoform X4

    UniProtKB/TrEMBL
    A0A8I5U6D5
    Related
    ENSPPYP00000016685.3
    Conserved Domains (2) summary
    cd03159
    Location:88 → 208
    TM4SF9_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF9_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment ...
    pfam00335
    Location:4 → 236
    Tetraspannin; Tetraspanin family

  6. XM_009240208.4 → XP_009238483.1  tetraspanin-5 isoform X5

    See identical proteins and their annotated locations for XP_009238483.1

    UniProtKB/TrEMBL
    A0A8I5U6D5
    Related
    ENSPPYP00000043389.1
    Conserved Domains (1) summary
    cd03159
    Location:87 → 207
    TM4SF9_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF9_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment ...

  7. XM_054554215.2 → XP_054410190.1  tetraspanin-5 isoform X2

    UniProtKB/TrEMBL
    A0A2J8TQP3, A0A8I5U6D5, H2PDY0
Nucleotide Protein
Heading Accession and Version

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