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TRAIP TRAF interacting protein [ Pongo abelii (Sumatran orangutan) ]

Gene ID: 100433719, updated on 26-Mar-2024

Summary

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Gene symbol
TRAIP
Gene description
TRAF interacting protein
Locus tag
CR201_G0035054
See related
Ensembl:ENSPPYG00000013859
Gene type
protein coding
RefSeq status
MODEL
Organism
Pongo abelii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 2
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2) 2 NC_085928.1 (104587989..104617258)
RS_2023_04 previous assembly NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1) 3 NC_071988.1 (92364886..92392844)

Chromosome 2 - NC_085928.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC129058255 Neighboring gene CaM kinase like vesicle associated Neighboring gene ubiquitin like modifier activating enzyme 7 Neighboring gene inka box actin regulator 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in replication fork processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in site of DNA damage IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase TRAIP

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028885655.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

Genomic

  1. NC_085928.1 Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

    Range
    104587989..104617258
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024245384.3 → XP_024101152.1  E3 ubiquitin-protein ligase TRAIP isoform X1

    UniProtKB/TrEMBL
    A0A2J8TGZ3, H2PAQ4
    Related
    ENSPPYP00000015507.3
    Conserved Domains (2) summary
    cd16480
    Location:6 → 50
    RING-H2_TRAIP; RING finger, H2 subclass, found in TRAF-interacting protein (TRAIP) and similar proteins
    cl25732
    Location:68 → 279
    SMC_N; RecF/RecN/SMC N terminal domain

  2. XM_024245385.3 → XP_024101153.1  E3 ubiquitin-protein ligase TRAIP isoform X2

    Conserved Domains (2) summary
    cd16480
    Location:6 → 50
    RING-H2_TRAIP; RING finger, H2 subclass, found in TRAF-interacting protein (TRAIP) and similar proteins
    cl25732
    Location:68 → 279
    SMC_N; RecF/RecN/SMC N terminal domain

  3. XM_024245386.3 → XP_024101154.1  E3 ubiquitin-protein ligase TRAIP isoform X3

    Conserved Domains (2) summary
    cd16480
    Location:6 → 50
    RING-H2_TRAIP; RING finger, H2 subclass, found in TRAF-interacting protein (TRAIP) and similar proteins
    cl25732
    Location:52 → 223
    SMC_N; RecF/RecN/SMC N terminal domain

  4. XM_054550730.2 → XP_054406705.1  E3 ubiquitin-protein ligase TRAIP isoform X4

Nucleotide Protein
Heading Accession and Version

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