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TRIM62 tripartite motif containing 62 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100414537, updated on 8-Mar-2024

Summary

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Gene symbol
TRIM62
Gene description
tripartite motif containing 62
See related
Ensembl:ENSCJAG00000001177
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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See TRIM62 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 7 NC_071448.1 (66819323..66854389, complement)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 7 NC_048389.1 (68312462..68347550, complement)

Chromosome 7 - NC_071448.1Genomic Context describing neighboring genes Neighboring gene cyclin-dependent kinase 4-like Neighboring gene adenylate kinase 2 Neighboring gene antizyme inhibitor 2 Neighboring gene synaptojanin-2-binding protein-like Neighboring gene zinc finger protein 362 Neighboring gene uncharacterized LOC108592558

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in innate immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of NF-kappaB transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of canonical NF-kappaB signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase TRIM62
Names
tripartite motif-containing protein 62

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071448.1 Reference mCalJa1.2.pat.X

    Range
    66819323..66854389 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035308637.2 → XP_035164528.1  E3 ubiquitin-protein ligase TRIM62 isoform X1

    UniProtKB/TrEMBL
    F7I4Y6, U3EY08
    Conserved Domains (4) summary
    COG1196
    Location:133 → 261
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd13744
    Location:284 → 471
    SPRY_PRY_TRIM62; PRY/SPRY domain in tripartite motif-binding protein 62 (TRIM62)
    cd16608
    Location:6 → 55
    RING-HC_TRIM62_C-IV; RING finger, HC subclass, found in tripartite motif-containing protein 62 (TRIM62) and similar proteins
    cd19792
    Location:91 → 128
    Bbox2_TRIM62_C-IV; B-box-type 2 zinc finger found in tripartite motif-containing protein 62 (TRIM62) and similar proteins

  2. XM_035308638.2 → XP_035164529.1  E3 ubiquitin-protein ligase TRIM62 isoform X1

    UniProtKB/TrEMBL
    F7I4Y6, U3EY08
    Conserved Domains (4) summary
    COG1196
    Location:133 → 261
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd13744
    Location:284 → 471
    SPRY_PRY_TRIM62; PRY/SPRY domain in tripartite motif-binding protein 62 (TRIM62)
    cd16608
    Location:6 → 55
    RING-HC_TRIM62_C-IV; RING finger, HC subclass, found in tripartite motif-containing protein 62 (TRIM62) and similar proteins
    cd19792
    Location:91 → 128
    Bbox2_TRIM62_C-IV; B-box-type 2 zinc finger found in tripartite motif-containing protein 62 (TRIM62) and similar proteins

  3. XM_035308639.2 → XP_035164530.1  E3 ubiquitin-protein ligase TRIM62 isoform X2

    UniProtKB/TrEMBL
    A0A2R8MUX6
    Conserved Domains (2) summary
    COG1196
    Location:1 → 137
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd13744
    Location:160 → 347
    SPRY_PRY_TRIM62; PRY/SPRY domain in tripartite motif-binding protein 62 (TRIM62)
Nucleotide Protein
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