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DDR1 discoidin domain receptor tyrosine kinase 1 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100413645, updated on 11-Apr-2024

Summary

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Gene symbol
DDR1
Gene description
discoidin domain receptor tyrosine kinase 1
See related
Ensembl:ENSCJAG00000019860
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 4
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 4 NC_071445.1 (32927538..32940457)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 4 NC_048386.1 (34036767..34056606)

Chromosome 4 - NC_071445.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L12-like Neighboring gene ribosomal protein L37a pseudogene Neighboring gene general transcription factor IIH subunit 4 Neighboring gene valyl-tRNA synthetase 2, mitochondrial

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables collagen binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein tyrosine kinase collagen receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell surface receptor protein tyrosine kinase signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in multicellular organism development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of receptor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
epithelial discoidin domain-containing receptor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071445.1 Reference mCalJa1.2.pat.X

    Range
    32927538..32940457
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054254832.1 → XP_054110807.1  epithelial discoidin domain-containing receptor 1

    UniProtKB/TrEMBL
    F6R412, U3CY78

  2. XM_054254830.1 → XP_054110805.1  epithelial discoidin domain-containing receptor 1

    UniProtKB/TrEMBL
    F6R412, U3CY78

  3. XM_054254829.1 → XP_054110804.1  epithelial discoidin domain-containing receptor 1

    UniProtKB/TrEMBL
    F6R412, U3CY78

  4. XM_054254831.1 → XP_054110806.1  epithelial discoidin domain-containing receptor 1

    UniProtKB/TrEMBL
    F6R412, U3CY78
Nucleotide Protein
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