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ASB1 ankyrin repeat and SOCS box containing 1 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100411904, updated on 8-Mar-2024

Summary

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Gene symbol
ASB1
Gene description
ankyrin repeat and SOCS box containing 1
See related
Ensembl:ENSCJAG00000000414
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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See ASB1 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 6 NC_071447.1 (156216374..156325088)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 6 NC_048388.1 (157444141..157553121)

Chromosome 6 - NC_071447.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC128932450 Neighboring gene TRAF3 interacting protein 1 Neighboring gene uncharacterized LOC128932451 Neighboring gene uncharacterized LOC128932452 Neighboring gene uncharacterized LOC100384983 Neighboring gene twist family bHLH transcription factor 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of ubiquitin ligase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ankyrin repeat and SOCS box protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071447.1 Reference mCalJa1.2.pat.X

    Range
    156216374..156325088
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002749961.5 → XP_002750007.1  ankyrin repeat and SOCS box protein 1

    See identical proteins and their annotated locations for XP_002750007.1

    UniProtKB/TrEMBL
    A0A2R8MZZ2, A0A2R8PG51
    Related
    ENSCJAP00000000708.2
    Conserved Domains (4) summary
    cd00204
    Location:79 → 212
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    cd03720
    Location:294 → 335
    SOCS_ASB1; SOCS (suppressors of cytokine signaling) box of ASB1-like proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The ...
    sd00045
    Location:79 → 108
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:22 → 108
    Ank_2; Ankyrin repeats (3 copies)

RNA

  1. XR_004744936.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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