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TNFAIP3 TNF alpha induced protein 3 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100397002, updated on 8-Mar-2024

Summary

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Gene symbol
TNFAIP3
Gene description
TNF alpha induced protein 3
See related
Ensembl:ENSCJAG00000019019
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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See TNFAIP3 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 4 NC_071445.1 (140705341..140722017)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 4 NC_048386.1 (141295690..141312388)

Chromosome 4 - NC_071445.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC118152995 Neighboring gene uncharacterized LOC103792643 Neighboring gene uncharacterized LOC103792645 Neighboring gene p53 apoptosis effector related to PMP22

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables K63-linked polyubiquitin modification-dependent protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein K29-linked deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein K33-linked deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein deubiquitination involved in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tumor necrosis factor alpha-induced protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071445.1 Reference mCalJa1.2.pat.X

    Range
    140705341..140722017
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035296840.2 → XP_035152731.1  tumor necrosis factor alpha-induced protein 3 isoform X2

    UniProtKB/TrEMBL
    F7I413
    Conserved Domains (2) summary
    smart00259
    Location:759 → 784
    ZnF_A20; A20-like zinc fingers
    pfam02338
    Location:98 → 257
    OTU; OTU-like cysteine protease

  2. XM_035296837.2 → XP_035152728.1  tumor necrosis factor alpha-induced protein 3 isoform X1

    Conserved Domains (2) summary
    smart00259
    Location:777 → 802
    ZnF_A20; A20-like zinc fingers
    pfam02338
    Location:116 → 275
    OTU; OTU-like cysteine protease

  3. XM_035296838.2 → XP_035152729.1  tumor necrosis factor alpha-induced protein 3 isoform X1

    Conserved Domains (2) summary
    smart00259
    Location:777 → 802
    ZnF_A20; A20-like zinc fingers
    pfam02338
    Location:116 → 275
    OTU; OTU-like cysteine protease

  4. XM_017971426.3 → XP_017826915.1  tumor necrosis factor alpha-induced protein 3 isoform X2

    UniProtKB/TrEMBL
    F7I413
    Conserved Domains (2) summary
    smart00259
    Location:759 → 784
    ZnF_A20; A20-like zinc fingers
    pfam02338
    Location:98 → 257
    OTU; OTU-like cysteine protease
Nucleotide Protein
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