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NSRP1 nuclear speckle splicing regulatory protein 1 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100394484, updated on 8-Mar-2024

Summary

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Gene symbol
NSRP1
Gene description
nuclear speckle splicing regulatory protein 1
See related
Ensembl:ENSCJAG00000013710
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Also known as
CCDC55
Orthologs
human mouse all
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Genomic context

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See NSRP1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 5 NC_071446.1 (99494004..99561289, complement)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 5 NC_048387.1 (102247615..102314912, complement)

Chromosome 5 - NC_071446.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 6 member 4 Neighboring gene developmental pluripotency-associated 5 protein-like Neighboring gene cystatin-B-like Neighboring gene actin, cytoplasmic 2-like Neighboring gene EF-hand calcium binding domain 5 Neighboring gene U6 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in regulation of alternative mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear speckle splicing regulatory protein 1
Names
coiled-coil domain containing 55

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071446.1 Reference mCalJa1.2.pat.X

    Range
    99494004..99561289 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002748344.6 → XP_002748390.2  nuclear speckle splicing regulatory protein 1 isoform X2

    See identical proteins and their annotated locations for XP_002748390.2

    UniProtKB/TrEMBL
    F6YHK4, F6YIN7
    Related
    ENSCJAP00000025211.2
    Conserved Domains (2) summary
    pfam09745
    Location:58 → 177
    DUF2040; Coiled-coil domain-containing protein 55 (DUF2040)
    cl28310
    Location:272 → 438
    Rho; Transcription termination factor Rho [Transcription]

  2. XM_008997145.4 → XP_008995393.1  nuclear speckle splicing regulatory protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8I3W236
    Conserved Domains (1) summary
    pfam09745
    Location:70 → 189
    DUF2040; Coiled-coil domain-containing protein 55 (DUF2040)

  3. XM_017972556.3 → XP_017828045.1  nuclear speckle splicing regulatory protein 1 isoform X3

    Related
    ENSCJAP00000025229.2
    Conserved Domains (2) summary
    PRK12678
    Location:218 → 384
    PRK12678; transcription termination factor Rho; Provisional
    pfam09745
    Location:4 → 123
    DUF2040; Coiled-coil domain-containing protein 55 (DUF2040)

  4. XM_054257056.1 → XP_054113031.1  nuclear speckle splicing regulatory protein 1 isoform X3

  5. XM_035303240.2 → XP_035159131.1  nuclear speckle splicing regulatory protein 1 isoform X3

    Conserved Domains (2) summary
    PRK12678
    Location:218 → 384
    PRK12678; transcription termination factor Rho; Provisional
    pfam09745
    Location:4 → 123
    DUF2040; Coiled-coil domain-containing protein 55 (DUF2040)

  6. XM_017972555.3 → XP_017828044.1  nuclear speckle splicing regulatory protein 1 isoform X3

    Conserved Domains (2) summary
    PRK12678
    Location:218 → 384
    PRK12678; transcription termination factor Rho; Provisional
    pfam09745
    Location:4 → 123
    DUF2040; Coiled-coil domain-containing protein 55 (DUF2040)

  7. XM_054257057.1 → XP_054113032.1  nuclear speckle splicing regulatory protein 1 isoform X3

Nucleotide Protein
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