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UPK1B uroplakin 1B [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100394083, updated on 8-Mar-2024

Summary

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Gene symbol
UPK1B
Gene description
uroplakin 1B
See related
Ensembl:ENSCJAG00000009095
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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See UPK1B in Genome Data Viewer
Location:
chromosome: 15
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 15 NC_071456.1 (77563914..77592980, complement)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 15 NC_048397.1 (78141386..78170401, complement)

Chromosome 15 - NC_071456.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 39A Neighboring gene Rho GTPase activating protein 31 Neighboring gene U6 spliceosomal RNA Neighboring gene beta-1,4-galactosyltransferase 4 Neighboring gene uncharacterized LOC103788385 Neighboring gene testis expressed 55 Neighboring gene immunoglobulin superfamily member 11

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uroplakin-1b

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071456.1 Reference mCalJa1.2.pat.X

    Range
    77563914..77592980 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008982400.4 → XP_008980648.1  uroplakin-1b isoform X1

    UniProtKB/TrEMBL
    F7BN59
    Related
    ENSCJAP00000008209.2
    Conserved Domains (2) summary
    cd03156
    Location:118 → 230
    uroplakin_I_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), uroplakin_I_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment ...
    pfam00335
    Location:10 → 258
    Tetraspannin; Tetraspanin family

  2. XM_035274127.2 → XP_035130018.1  uroplakin-1b isoform X2

    Conserved Domains (1) summary
    cd03156
    Location:38 → 150
    uroplakin_I_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), uroplakin_I_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment ...
Nucleotide Protein
Heading Accession and Version

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