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PPP4C protein phosphatase 4 catalytic subunit [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100393931, updated on 8-Mar-2024

Summary

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Gene symbol
PPP4C
Gene description
protein phosphatase 4 catalytic subunit
See related
Ensembl:ENSCJAG00000006846
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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See PPP4C in Genome Data Viewer
Location:
chromosome: 12
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 12 NC_071453.1 (27230010..27239921, complement)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 12 NC_048394.1 (27097648..27107652, complement)

Chromosome 12 - NC_071453.1Genomic Context describing neighboring genes Neighboring gene yippee like 3 Neighboring gene T-box transcription factor 6 Neighboring gene uncharacterized LOC118146230 Neighboring gene aldolase, fructose-bisphosphate A Neighboring gene keratin-associated protein 10-2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein serine/threonine phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in double-strand break repair via homologous recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in peptidyl-serine dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
serine/threonine-protein phosphatase 4 catalytic subunit

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071453.1 Reference mCalJa1.2.pat.X

    Range
    27230010..27239921 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002756036.6 → XP_002756082.1  serine/threonine-protein phosphatase 4 catalytic subunit isoform X1

    See identical proteins and their annotated locations for XP_002756082.1

    UniProtKB/TrEMBL
    F6S3M7
    Related
    ENSCJAP00000012725.2
    Conserved Domains (1) summary
    cd07415
    Location:6 → 290
    MPP_PP2A_PP4_PP6; PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain

  2. XM_017978845.3 → XP_017834334.1  serine/threonine-protein phosphatase 4 catalytic subunit isoform X3

    Conserved Domains (1) summary
    cd07415
    Location:1 → 211
    MPP_PP2A_PP4_PP6; PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain

  3. XM_054242747.1 → XP_054098722.1  serine/threonine-protein phosphatase 4 catalytic subunit isoform X2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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