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TRMT10B tRNA methyltransferase 10B [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100392858, updated on 3-Apr-2024

Summary

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Gene symbol
TRMT10B
Gene description
tRNA methyltransferase 10B
See related
Ensembl:ENSCJAG00000010576
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Also known as
RG9MTD3
Orthologs
human mouse all
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Genomic context

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See TRMT10B in Genome Data Viewer
Location:
chromosome: 1
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 1 NC_071442.1 (141774909..141800990)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 1 NC_048383.1 (143002929..143046981)

Chromosome 1 - NC_071442.1Genomic Context describing neighboring genes Neighboring gene translocase of outer mitochondrial membrane 5 Neighboring gene FERM and PDZ domain containing 1 Neighboring gene dnaJ homolog subfamily B member 6-like Neighboring gene exosome component 3 Neighboring gene ribosomal protein L17 pseudogene Neighboring gene DDB1 and CUL4 associated factor 10 Neighboring gene 5S ribosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables tRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tRNA N1-guanine methylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tRNA methyltransferase 10 homolog B
Names
RNA (guanine-9-) methyltransferase domain containing 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071442.1 Reference mCalJa1.2.pat.X

    Range
    141774909..141800990
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035252425.2 → XP_035108316.1  tRNA methyltransferase 10 homolog B isoform X1

    UniProtKB/TrEMBL
    F6RJI7, F7HR86
    Conserved Domains (1) summary
    cd18100
    Location:125 → 307
    Trm10euk_B; eukaryotic tRNA m1G9 methyltransferase Trm10 homolog B

  2. XM_008999713.4 → XP_008997961.1  tRNA methyltransferase 10 homolog B isoform X1

    See identical proteins and their annotated locations for XP_008997961.1

    UniProtKB/TrEMBL
    F6RJI7, F7HR86
    Related
    ENSCJAP00000019520.2
    Conserved Domains (1) summary
    cd18100
    Location:125 → 307
    Trm10euk_B; eukaryotic tRNA m1G9 methyltransferase Trm10 homolog B

  3. XM_054257938.1 → XP_054113913.1  tRNA methyltransferase 10 homolog B isoform X3

  4. XM_054257932.1 → XP_054113907.1  tRNA methyltransferase 10 homolog B isoform X2

  5. XM_054257945.1 → XP_054113920.1  tRNA methyltransferase 10 homolog B isoform X4

RNA

  1. XR_004727230.2 RNA Sequence

  2. XR_004727240.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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