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Trmt10b tRNA methyltransferase 10B [ Mus musculus (house mouse) ]

Gene ID: 69934, updated on 12-Aug-2019

Summary

Official Symbol
Trmt10bprovided by MGI
Official Full Name
tRNA methyltransferase 10Bprovided by MGI
Primary source
MGI:MGI:1917184
See related
Ensembl:ENSMUSG00000035601
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Rnmtd3; Rg9mtd3; 2610042J10Rik
Expression
Ubiquitous expression in CNS E18 (RPKM 4.1), CNS E11.5 (RPKM 4.0) and 25 other tissues See more
Orthologs

Genomic context

See Trmt10b in Genome Data Viewer
Location:
4; 4 B1
Exon count:
11
Annotation release Status Assembly Chr Location
108 current GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (45297068..45316134)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (45310040..45329003)

Chromosome 4 - NC_000070.6Genomic Context describing neighboring genes Neighboring gene translocase of outer mitochondrial membrane 5 Neighboring gene FERM and PDZ domain containing 1 Neighboring gene FERM and PDZ domain containing 1, opposite strand Neighboring gene exosome component 3 Neighboring gene predicted gene, 31017

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 
tRNA (guanine(9)-N(1))-methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 
tRNA (guanine-N1-)-methyltransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
tRNA (guanine-N1-)-methyltransferase activity ISO
Inferred from Sequence Orthology
more info
 
tRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
transferase activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
methylation IEA
Inferred from Electronic Annotation
more info
 
mitochondrial tRNA processing IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
cytosol IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cytosol ISO
Inferred from Sequence Orthology
more info
 
nucleoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
tRNA methyltransferase 10 homolog B
Names
RNA (guanine-9-) methyltransferase domain containing 3
RNA (guanine-9-)-methyltransferase domain-containing protein 3
tRNA (guanine(9)-N(1))-methyltransferase TRMT10B
NP_081542.2
XP_006538305.1
XP_006538306.1
XP_006538307.1
XP_006538308.1
XP_006538310.1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_027266.4NP_081542.2  tRNA methyltransferase 10 homolog B

    See identical proteins and their annotated locations for NP_081542.2

    Status: PROVISIONAL

    Source sequence(s)
    AL772285
    Consensus CDS
    CCDS18135.1
    UniProtKB/Swiss-Prot
    Q9D075
    Related
    ENSMUSP00000041052.2, ENSMUST00000044673.8
    Conserved Domains (1) summary
    pfam01746
    Location:136308
    tRNA_m1G_MT; tRNA (Guanine-1)-methyltransferase

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p6 C57BL/6J

Genomic

  1. NC_000070.6 Reference GRCm38.p6 C57BL/6J

    Range
    45297068..45316134
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006538243.4XP_006538306.1  tRNA methyltransferase 10 homolog B isoform X1

    See identical proteins and their annotated locations for XP_006538306.1

    UniProtKB/Swiss-Prot
    Q9D075
    Conserved Domains (1) summary
    pfam01746
    Location:136308
    tRNA_m1G_MT; tRNA (Guanine-1)-methyltransferase
  2. XM_006538244.3XP_006538307.1  tRNA methyltransferase 10 homolog B isoform X1

    See identical proteins and their annotated locations for XP_006538307.1

    UniProtKB/Swiss-Prot
    Q9D075
    Conserved Domains (1) summary
    pfam01746
    Location:136308
    tRNA_m1G_MT; tRNA (Guanine-1)-methyltransferase
  3. XM_006538242.4XP_006538305.1  tRNA methyltransferase 10 homolog B isoform X1

    See identical proteins and their annotated locations for XP_006538305.1

    UniProtKB/Swiss-Prot
    Q9D075
    Conserved Domains (1) summary
    pfam01746
    Location:136308
    tRNA_m1G_MT; tRNA (Guanine-1)-methyltransferase
  4. XM_006538247.3XP_006538310.1  tRNA methyltransferase 10 homolog B isoform X3

    Conserved Domains (1) summary
    cl00407
    Location:32195
    tRNA_m1G_MT; tRNA (Guanine-1)-methyltransferase
  5. XM_006538245.3XP_006538308.1  tRNA methyltransferase 10 homolog B isoform X2

    Conserved Domains (1) summary
    pfam01746
    Location:73245
    tRNA_m1G_MT; tRNA (Guanine-1)-methyltransferase

RNA

  1. XR_001784199.1 RNA Sequence

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