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Ctxn2 cortexin 2 [ Rattus norvegicus (Norway rat) ]

Gene ID: 100302373, updated on 8-Mar-2024

Summary

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Symbol
Ctxn2provided by RGD
Full Name
cortexin 2provided by RGD
Primary source
RGD:2311261
See related
Ensembl:ENSRNOG00000037146 AllianceGenome:RGD:2311261
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to be integral component of membrane. Orthologous to human CTXN2 (cortexin 2). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward (RPKM 28.9) See more
Orthologs
human mouse all
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Genomic context

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See Ctxn2 in Genome Data Viewer
Location:
3q36
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (132842237..132854774)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (112390972..112401321)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (117406300..117416786)

Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108350455 Neighboring gene solute carrier family 24 member 5 Neighboring gene myelin expression factor 2 Neighboring gene solute carrier family 12 member 1 Neighboring gene ribosomal protein L32, pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RGD

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
cortexin-2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001162935.1 → NP_001156407.1  cortexin-2

    See identical proteins and their annotated locations for NP_001156407.1

    Status: VALIDATED

    Source sequence(s)
    AW524713, BF562671
    UniProtKB/TrEMBL
    D4A1T4
    Conserved Domains (1) summary
    pfam11057
    Location:10 → 82
    Cortexin; Cortexin of kidney

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086021.1 Reference GRCr8

    Range
    132842237..132854774
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039104078.2 → XP_038960006.1  cortexin-2 isoform X1

    UniProtKB/TrEMBL
    D4A1T4
    Related
    ENSRNOP00000083841.1
    Conserved Domains (1) summary
    pfam11057
    Location:10 → 82
    Cortexin; Cortexin of kidney

  2. XM_006234891.5 → XP_006234953.1  cortexin-2 isoform X1

    See identical proteins and their annotated locations for XP_006234953.1

    UniProtKB/TrEMBL
    D4A1T4
    Related
    ENSRNOP00000052906.3
    Conserved Domains (1) summary
    pfam11057
    Location:10 → 82
    Cortexin; Cortexin of kidney

  3. XM_039104079.2 → XP_038960007.1  cortexin-2 isoform X1

    UniProtKB/TrEMBL
    D4A1T4
    Conserved Domains (1) summary
    pfam11057
    Location:10 → 82
    Cortexin; Cortexin of kidney
Nucleotide Protein Strain
Heading Accession and Version

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