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CSMD1 CUB and Sushi multiple domains 1 [ Taeniopygia guttata (zebra finch) ]

Gene ID: 100230644, updated on 8-Mar-2024

Summary

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Gene symbol
CSMD1
Gene description
CUB and Sushi multiple domains 1
See related
Ensembl:ENSTGUG00000012896
Gene type
protein coding
RefSeq status
MODEL
Organism
Taeniopygia guttata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Taeniopygia
Orthologs
human mouse all
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Genomic context

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See CSMD1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
70
Annotation release Status Assembly Chr Location
106 current bTaeGut1.4.pri (GCF_003957565.2) 3 NC_044214.2 (21503729..22560388, complement)
105 previous assembly bTaeGut2.pat.W.v2 (GCF_008822105.2) 3 NC_045001.1 (20584565..21640641, complement)

Chromosome 3 - NC_044214.2Genomic Context describing neighboring genes Neighboring gene FSD1-like protein Neighboring gene uncharacterized LOC115494249 Neighboring gene uncharacterized LOC115494608 Neighboring gene uncharacterized LOC115494250 Neighboring gene uncharacterized LOC115494634

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
CUB and sushi domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Taeniopygia guttata Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bTaeGut1.4.pri Primary Assembly

Genomic

  1. NC_044214.2 Reference bTaeGut1.4.pri Primary Assembly

    Range
    21503729..22560388 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030269463.3 → XP_030125323.3  CUB and sushi domain-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A674HLN5
    Conserved Domains (5) summary
    cd00033
    Location:521 → 575
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
    PHA02639
    Location:2850 → 3026
    PHA02639; EEV host range protein; Provisional
    smart00032
    Location:139 → 196
    CCP; Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR)
    PHA02927
    Location:2613 → 2849
    PHA02927; secreted complement-binding protein; Provisional
    cd00041
    Location:752 → 859
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.

  2. XM_030269462.3 → XP_030125322.3  CUB and sushi domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A674HTP7
    Conserved Domains (5) summary
    cd00033
    Location:521 → 575
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
    PHA02639
    Location:2850 → 3026
    PHA02639; EEV host range protein; Provisional
    smart00032
    Location:139 → 196
    CCP; Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR)
    PHA02927
    Location:2613 → 2849
    PHA02927; secreted complement-binding protein; Provisional
    cd00041
    Location:752 → 859
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
Nucleotide Protein
Heading Accession and Version

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