Format

Send to:

Choose Destination

Csmd1 CUB and Sushi multiple domains 1 [ Mus musculus (house mouse) ]

Gene ID: 94109, updated on 27-Mar-2018

Summary

Official Symbol
Csmd1provided by MGI
Official Full Name
CUB and Sushi multiple domains 1provided by MGI
Primary source
MGI:MGI:2137383
See related
Ensembl:ENSMUSG00000060924 Vega:OTTMUSG00000033994
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
mKIAA1890; B930082H09
Expression
Biased expression in cortex adult (RPKM 2.0), frontal lobe adult (RPKM 1.5) and 10 other tissues See more
Orthologs

Genomic context

See Csmd1 in Genome Data Viewer
Location:
8; 8 A1.1-A1.3
Exon count:
72
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 8 NC_000074.6 (15892538..17535385, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 8 NC_000074.5 (15892545..17535385, complement)

Chromosome 8 - NC_000074.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 46033 Neighboring gene chromobox 1 pseudogene Neighboring gene predicted gene, 46073 Neighboring gene microRNA 3106 Neighboring gene predicted gene 16347 Neighboring gene predicted gene, 18319 Neighboring gene predicted gene, 39136 Neighboring gene predicted gene, 39137 Neighboring gene heat shock protein 1 (chaperonin) pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1)  1 citation
  • Endonuclease-mediated (1) 

General gene information

Markers

Homology

Clone Names

  • KIAA1890

Gene Ontology Provided by MGI

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
glucose homeostasis IMP
Inferred from Mutant Phenotype
more info
PubMed 
startle response IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
cellular_component ND
No biological Data available
more info
 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
CUB and sushi domain-containing protein 1
Names
CUB and sushi multiple domains protein 1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_053171.2NP_444401.2  CUB and sushi domain-containing protein 1 precursor

    See identical proteins and their annotated locations for NP_444401.2

    Status: VALIDATED

    Source sequence(s)
    AC101229, AC154107, AK081081, AK134585, AK220429, AY017475
    Consensus CDS
    CCDS40244.1
    UniProtKB/Swiss-Prot
    Q923L3
    UniProtKB/TrEMBL
    Q5DTU1
    Related
    ENSMUSP00000080751.6, OTTMUSP00000046395, ENSMUST00000082104.6, OTTMUST00000085800
    Conserved Domains (5) summary
    cd00033
    Location:26802734
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
    smart00032
    Location:20872142
    CCP; Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR)
    PHA02927
    Location:26192855
    PHA02927; secreted complement-binding protein; Provisional
    cd00041
    Location:758865
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    pfam00084
    Location:29783032
    Sushi; Sushi repeat (SCR repeat)

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000074.6 Reference GRCm38.p4 C57BL/6J

    Range
    15892538..17535385 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006508931.3XP_006508994.1  CUB and sushi domain-containing protein 1 isoform X2

    Conserved Domains (5) summary
    cd00033
    Location:26862740
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
    smart00032
    Location:20932148
    CCP; Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR)
    PHA02927
    Location:26252861
    PHA02927; secreted complement-binding protein; Provisional
    cd00041
    Location:764871
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    pfam00084
    Location:29843038
    Sushi; Sushi repeat (SCR repeat)
  2. XM_006508930.3XP_006508993.1  CUB and sushi domain-containing protein 1 isoform X1

    Conserved Domains (5) summary
    cd00033
    Location:26862740
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
    smart00032
    Location:20932148
    CCP; Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR)
    PHA02927
    Location:26252861
    PHA02927; secreted complement-binding protein; Provisional
    cd00041
    Location:764871
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    pfam00084
    Location:29843038
    Sushi; Sushi repeat (SCR repeat)
  3. XM_006508932.3XP_006508995.1  CUB and sushi domain-containing protein 1 isoform X3

    Conserved Domains (3) summary
    cd00033
    Location:533587
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
    smart00032
    Location:151208
    CCP; Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR)
    cd00041
    Location:764871
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
Support Center