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BCL6 BCL6 transcription repressor [ Taeniopygia guttata (zebra finch) ]

Gene ID: 100222134, updated on 8-Mar-2024

Summary

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Gene symbol
BCL6
Gene description
BCL6 transcription repressor
See related
Ensembl:ENSTGUG00000009413
Gene type
protein coding
RefSeq status
MODEL
Organism
Taeniopygia guttata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Taeniopygia
Orthologs
human mouse all
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Genomic context

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See BCL6 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
10
Annotation release Status Assembly Chr Location
106 current bTaeGut1.4.pri (GCF_003957565.2) 9 NC_044221.2 (15679927..15698300)
105 previous assembly bTaeGut2.pat.W.v2 (GCF_008822105.2) 9 NC_045008.1 (15787236..15805626)

Chromosome 9 - NC_044221.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116808692 Neighboring gene uncharacterized LOC115496343 Neighboring gene somatostatin Neighboring gene MBL associated serine protease 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cytokine production IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of immune system process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
B-cell lymphoma 6 protein
Names
B cell CLL/lymphoma 6
B-cell CLL/lymphoma 6 (zinc finger protein 51)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Taeniopygia guttata Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bTaeGut1.4.pri Primary Assembly

Genomic

  1. NC_044221.2 Reference bTaeGut1.4.pri Primary Assembly

    Range
    15679927..15698300
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030279945.3 → XP_030135805.3  B-cell lymphoma 6 protein isoform X1

    UniProtKB/TrEMBL
    H0ZGK1
    Conserved Domains (3) summary
    COG5189
    Location:566 → 671
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:599 → 619
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18331
    Location:8 → 125
    BTB_POZ_ZBTB27_BCL6; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in B-cell lymphoma 6 protein (BCL-6)

  2. XM_030279946.3 → XP_030135806.3  B-cell lymphoma 6 protein isoform X2

    Conserved Domains (3) summary
    COG5189
    Location:546 → 651
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:579 → 599
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18331
    Location:8 → 125
    BTB_POZ_ZBTB27_BCL6; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in B-cell lymphoma 6 protein (BCL-6)
Nucleotide Protein
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