ZC3HC1 zinc finger C3HC-type containing 1 [Pongo abelii (Sumatran orangutan)] - Gene

Summary

Gene symbol: ZC3HC1
Gene description: zinc finger C3HC-type containing 1
Locus tag: CR201_G0030351
See related: Ensembl:ENSPPYG00000017998
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Pongo abelii
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
Also known as: NIPA
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 6

Exon count:: 13

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2)	6	NC_071991.2 (127306871..127341036, complement)
RS_2023_04	previous assembly	NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1)	7	NC_071992.1 (121129424..121163579, complement)

Chromosome 6 - NC_071991.2 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

NIPA__6055 (e-PCR)
- UniSTS:463635

ZC3HC1 (e-PCR)
- UniSTS:503675

RH12411 (e-PCR)
- UniSTS:60872

RH103940 (e-PCR)
- UniSTS:98265

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables zinc ion binding	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in nucleus	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: zinc finger C3HC-type protein 1

Names: Nuclear-interacting partner of ALK; nuclear-interacting partner of anaplastic lymphoma kinase

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001133992.2 → NP_001127464.1 zinc finger C3HC-type protein 1

See identical proteins and their annotated locations for NP_001127464.1

Status: PROVISIONAL

Source sequence(s)

CR859639

UniProtKB/Swiss-Prot

Q5R8V9

UniProtKB/TrEMBL

A0A2J8U4E8, H2PNI1

Related

ENSPPYP00000020194.3, ENSPPYT00000020987.3

Conserved Domains (2) summary

pfam07967
Location:73 → 201

zf-C3HC; C3HC zinc finger-like

pfam08600
Location:248 → 338

Rsm1; Rsm1-like

RefSeqs of Annotated Genomes: GCF_028885655.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

Genomic

NC_071991.2 Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

Range

127306871..127341036 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_063725599.1 → XP_063581669.1 zinc finger C3HC-type protein 1 isoform X1
XM_054559089.1 → XP_054415064.1 zinc finger C3HC-type protein 1 isoform X2
XM_024249382.2 → XP_024105150.1 zinc finger C3HC-type protein 1 isoform X2

UniProtKB/TrEMBL

A0A8I5TM44

Related

ENSPPYP00000027158.1

Conserved Domains (2) summary

pfam07967
Location:1 → 88

zf-C3HC; C3HC zinc finger-like

pfam08600
Location:135 → 225

Rsm1; Rsm1-like