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ESRRB estrogen related receptor beta [ Sus scrofa (pig) ]

Gene ID: 100151940, updated on 8-Mar-2024

Summary

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Official Symbol
ESRRBprovided by VGNC
Official Full Name
estrogen related receptor betaprovided by VGNC
Primary source
VGNC:VGNC:87794
See related
Ensembl:ENSSSCG00000002388
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Biased expression in kidney (RPKM 5.9), ovary (RPKM 1.5) and 4 other tissues See more
Orthologs
human mouse all
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Genomic context

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See ESRRB in Genome Data Viewer
Location:
chromosome: 7
Exon count:
12
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 7 NC_010449.5 (99511135..99699478)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 7 NC_010449.4 (105560818..105743671)

Chromosome 7 - NC_010449.5Genomic Context describing neighboring genes Neighboring gene G-patch domain containing 2 like Neighboring gene uncharacterized LOC110261635 Neighboring gene uncharacterized LOC106504512 Neighboring gene vasohibin 1 Neighboring gene angel homolog 1 Neighboring gene leucine rich repeat containing 74A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. ESRRB plays a crucial role in the promotion of porcine cell reprograming. Yang F, et al. J Cell Physiol, 2018 Feb. PMID 28636277
  2. Characterization and functional analysis of porcine estrogen-related receptors and their alternative splicing variants. Yang F, et al. J Anim Sci, 2015 Sep. PMID 26440325

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear steroid receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables steroid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
steroid hormone receptor ERR2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010449.5 Reference Sscrofa11.1 Primary Assembly

    Range
    99511135..99699478
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021099544.1 → XP_020955203.1  steroid hormone receptor ERR2 isoform X3

    UniProtKB/TrEMBL
    A0A0U2MTS4, A0A287AYZ8, A0A4X1T7Z7, A0A4X1T800
    Conserved Domains (2) summary
    cd06946
    Location:217 → 436
    NR_LBD_ERR; The ligand binding domain of estrogen receptor-related nuclear receptors
    cd07170
    Location:103 → 198
    NR_DBD_ERR; DNA-binding domain of estrogen related receptors (ERR) is composed of two C4-type zinc fingers

  2. XM_001928051.7 → XP_001928086.2  steroid hormone receptor ERR2 isoform X3

    UniProtKB/TrEMBL
    A0A0U2MTS4, A0A287AYZ8, A0A4X1T7Z7, A0A4X1T800
    Related
    ENSSSCP00000049178.1, ENSSSCT00000066216.2
    Conserved Domains (2) summary
    cd06946
    Location:217 → 436
    NR_LBD_ERR; The ligand binding domain of estrogen receptor-related nuclear receptors
    cd07170
    Location:103 → 198
    NR_DBD_ERR; DNA-binding domain of estrogen related receptors (ERR) is composed of two C4-type zinc fingers

  3. XM_021099542.1 → XP_020955201.1  steroid hormone receptor ERR2 isoform X1

    UniProtKB/TrEMBL
    A0A0U2MTS4, A0A4X1T7F8
    Conserved Domains (2) summary
    cd06946
    Location:237 → 456
    NR_LBD_ERR; The ligand binding domain of estrogen receptor-related nuclear receptors
    cd07170
    Location:123 → 218
    NR_DBD_ERR; DNA-binding domain of estrogen related receptors (ERR) is composed of two C4-type zinc fingers

  4. XM_021099543.1 → XP_020955202.1  steroid hormone receptor ERR2 isoform X2

    UniProtKB/TrEMBL
    A0A0U2MTS4, A0A4X1T812, A0A8D1Z5B1, F1S2P9
    Related
    ENSSSCP00000002588.3, ENSSSCT00000002655.5
    Conserved Domains (2) summary
    cd06946
    Location:233 → 452
    NR_LBD_ERR; The ligand binding domain of estrogen receptor-related nuclear receptors
    cd07170
    Location:119 → 214
    NR_DBD_ERR; DNA-binding domain of estrogen related receptors (ERR) is composed of two C4-type zinc fingers
Nucleotide Protein Strain
Heading Accession and Version

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