UBB ubiquitin B [Sus scrofa (pig)] - Gene

Summary

Official Symbol: UBBprovided by VGNC
Official Full Name: ubiquitin Bprovided by VGNC
Primary source: VGNC:VGNC:98389
See related: Ensembl:ENSSSCG00000018033
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Sus scrofa
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression: Ubiquitous expression in ovary (RPKM 1618.6), heart (RPKM 1394.2) and 8 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 12

Exon count:: 3

Annotation release	Status	Assembly	Chr	Location
106	current	Sscrofa11.1 (GCF_000003025.6)	12	NC_010454.4 (59171258..59172841, complement)
105	previous assembly	Sscrofa10.2 (GCF_000003025.5)	12	NC_010454.3 (62297981..62299561, complement)

Chromosome 12 - NC_010454.4 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
BioProject: PRJNA311523
Publication: PMID 27646534
Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

39082591 (e-PCR)
- UniSTS:498050

UBB (e-PCR)
- UniSTS:266685

RH1659 (e-PCR)
- UniSTS:62659

Ubc (e-PCR), detects polymorphism
- UniSTS:532466

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables protein tag activity	IEA Inferred from Electronic Annotation more info	PubMed
enables ubiquitin protein ligase binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in modification-dependent protein catabolic process	IEA Inferred from Electronic Annotation more info	PubMed
involved_in protein ubiquitination	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in cytoplasm	IEA Inferred from Electronic Annotation more info	PubMed
located_in nucleus	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: polyubiquitin-B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.