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POLR1E RNA polymerase I subunit E [ Equus caballus (horse) ]

Gene ID: 100066520, updated on 8-Mar-2024

Summary

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Official Symbol
POLR1Eprovided by VGNC
Official Full Name
RNA polymerase I subunit Eprovided by VGNC
Primary source
VGNC:VGNC:21672
See related
Ensembl:ENSECAG00000014669
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See POLR1E in Genome Data Viewer
Location:
chromosome: 25
Exon count:
12
Annotation release Status Assembly Chr Location
103 current EquCab3.0 (GCF_002863925.1) 25 NC_009168.3 (2617194..2634188)
102 previous assembly EquCab2.0 (GCF_000002305.2) 25 NC_009168.2 (2578879..2595724)

Chromosome 25 - NC_009168.3Genomic Context describing neighboring genes Neighboring gene glyoxylate and hydroxypyruvate reductase Neighboring gene microRNA mir-9032 Neighboring gene F-box protein 10 Neighboring gene uncharacterized LOC111770682

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA polymerase I preinitiation complex assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nucleolar large rRNA transcription by RNA polymerase I IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription elongation by RNA polymerase I IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase I complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA-directed RNA polymerase I subunit RPA49
Names
polymerase (RNA) I polypeptide E, 53kDa

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Equus caballus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009168.3 Reference EquCab3.0 Primary Assembly

    Range
    2617194..2634188
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001504281.6 → XP_001504331.1  DNA-directed RNA polymerase I subunit RPA49

    See identical proteins and their annotated locations for XP_001504331.1

    UniProtKB/TrEMBL
    A0A9L0RB20, A0A9L0TDJ7
    Related
    ENSECAP00000085196.1, ENSECAT00000123643.1
    Conserved Domains (1) summary
    pfam06870
    Location:36 → 417
    RNA_pol_I_A49; A49-like RNA polymerase I associated factor
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases
Research Materials