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Report for CCDS56448.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56448.1 Public Homo sapiens 6 NCOA7 24 110 108 CCDS HistoryNCBI Gene:135112Re-query CCDS DB by CCDS ID:56448.1Re-query CCDS DB by GeneID:135112See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56448.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000229634.13 ENSP00000229634.9 Accepted alive Link to Ensembl Transcript Viewer:ENST00000229634.13Link to Ensembl Protein Viewer:ENSP00000229634.9Re-query CCDS DB by Nucleotide ID:ENST00000229634Re-query CCDS DB by Protein ID:ENSP00000229634
Original member Current member NCBI NM_001199621.2 NP_001186550.1 Accepted alive Link to Nucleotide Sequence:NM_001199621.2Link to Protein Sequence:NP_001186550.1Re-query CCDS DB by Nucleotide ID:NM_001199621Re-query CCDS DB by Protein ID:NP_001186550Link to BLAST:NP_001186550.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001186550.1 827 Q8NI08-7 827 100% 0 0

Chromosomal Locations for CCDS 56448.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 125874930 125874968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125878263 125878370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125881090 125881203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125882426 125882551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125885159 125885343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125888972 125889981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125890642 125890810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125915333 125915480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125920943 125921068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125922682 125922834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125927663 125927758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125928174 125928247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125928636 125928771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2484 nt):
ATGGTGGTTCAGAAGCCCCATGGGACTATGGAATACACTGCTGGAAACCAGGACACCCTAAACTCCATAG
CA
CTGAAATTTAACATCACTCCCAATAAATTGGTGGAACTGAATAAACTTTTCACACATACTATTGTTCC
A
GGCCAGGTCCTTTTTGTGCCAGATGCCAACTCTCCTTCCAGTACCTTAAGGCTATCATCATCCAGTCCT
GGT
GCTACTGTCTCTCCTTCATCATCAGATGCAGAATATGATAAATTGCCTGATGCTGACTTAGCACGAA
AG
GCCTTGAAACCCATTGAAAGAGTCTTATCGTCTACTTCTGAAGAAGATGAGCCAGGTGTGGTGAAATT
T
TTAAAAATGAATTGTCGATACTTCACCGATGGAAAGGGTGTGGTTGGCGGTGTTATGATAGTGACTCCT
AAC
AACATCATGTTTGACCCTCATAAATCTGATCCTCTGGTTATTGAAAATGGGTGTGAGGAGTATGGTC
TC
ATCTGCCCCATGGAAGAGGTTGTTTCCATTGCGCTCTACAATGACATTTCTCACATGAAGATCAAAGA
T
GCCTTGCCATCGCCTGGAGAATGGGAAGACCTGGCTTCAGAAAAGGATATCAACCCATTCAGTAAGTTC
AAA
TCTATCAACAAGGAAAAACGACAGCAGAATGGAGAGAAAATTATGACTTCGGATTCCAGACCAATAG
TA
CCTTTGGAGAAGTCCACAGGACATACACCTACAAAGCCCTCAGGCAGCTCTGTGTCAGAGAAATTAAA
G
AAACTGGACTCCTCTAGGGAGACATCCCATGGTTCTCCCACAGTGACTAAGCTCAGCAAGGAACCTTCC
GAC
ACTTCTTCTGCATTTGAATCTACAGCCAAAGAAAACTTTCTAGGGGAAGATGATGATTTTGTTGACT
TG
GAAGAACTTTCTTCTCAAACTGGTGGTGGAATGCACAAAAAAGACACCTTGAAGGAGTGCCTTTCTCT
T
GACCCAGAGGAACGAAAGAAAGCTGAGTCACAAATAAACAATTCTGCCGTGGAAATGCAGGTGCAGTCA
GCC
CTAGCCTTTTTGGGAACAGAGAATGATGTTGAACTGAAGGGGGCGCTAGATTTAGAAACCTGTGAGA
AG
CAAGATATAATGCCAGAAGTGGACAAGCAGTCTGGTTCGCCAGAAAGCCGAGTAGAAAACACACTGAA
C
ATACATGAAGATTTAGATAAAGTTAAACTCATTGAATATTACCTGACTAAGAACAAAGAAGGGCCACAG
GTA
TCTGAAAATTTGCAGAAAACAGAATTAAGTGATGGAAAAAGTATTGAACCAGGGGGAATAGACATTA
CC
CTTAGTAGTTCTCTTTCCCAGGCGGGTGATCCCATAACTGAGGGCAATAAAGAGCCAGATAAGACCTG
G
GTGAAAAAGGGAGAGCCCCTCCCGGTAAAACTGAACTCTTCTACAGAAGCAAATGTGATTAAAGAGGCT
CTA
GACTCCTCTTTGGAATCTACTCTGGACAACAGCTGTCAAGGTGCACAAATGGATAATAAATCTGAAG
TT
CAGTTGTGGCTGTTAAAGAGAATTCAGGTACCCATTGAAGATATACTTCCTTCAAAAGAAGAAAAAAG
C
AAGACCCCACCCATGTTCCTGTGCATCAAAGTGGGAAAACCAATGAGAAAATCCTTTGCCACTCACACT
GCA
GCCATGGTCCAGCAGTACGGCAAACGGAGAAAGCAGCCAGAGTACTGGTTTGCTGTTCCTCGGGAGA
G
G
GTGGATCATTTGTACACATTCTTTGTTCAGTGGTCTCCCGATGTCTATGGAAAAGATGCCAAAGAGCA
A
GGCTTTGTGGTGGTGGAGAAGGAAGAACTGAACATGATTGACAACTTCTTCAGTGAGCCAACAACCAAG
AGC
TGGGAGATCATCACTGTTGAAGAGGCAAAGCGCAGGAAGAGCACATGCAGCTACTATGAAGACGAGG
AC
GAAGAGGTGCTGCCTGTCCTACGGCCCCACAGCGCGCTCCTGGAGAATATGCACATCGAGCAGCTGGC
C
CGACGCCTTCCTGCAAGGGTGCAAGGGTATCCATGGAGACTGGCCTATAGCACGTTAGAGCACGGGACC
AGC
TTAAAGACGCTCTACCGGAAATCGGCATCACTAGACAGTCCTGTCCTATTGGTCATCAAAGATATGG
AT
AATCAGATTTTTGGAGCATATGCAACTCATCCTTTCAAGTTCAGTGACCACTATTATGGCACAGGCGA
A
ACTTTTCTCTACACATTCAGCCCTCATTTTAAGGTCTTTAAGTGGAGTGGAGAAAATTCATACTTTATC
AAT
GGAGACATAAGTTCTTTAGAACTTGGTGGTGGAGGGGGACGATTTGGTTTATGGCTAGATGCTGATT
TA
TACCACGGACGAAGCAACTCTTGCAGCACTTTCAATAATGATATTCTTTCCAAAAAGGAAGACTTCAT
A
GTTCAGGATCTGGAGGTGTGGGCATTTGATTGA


Translation (827 aa):
MVVQKPHGTMEYTAGNQDTLNSIALKFNITPNKLVELNKLFTHTIVPGQVLFVPDANSPSSTLRLSSSSP
G
ATVSPSSSDAEYDKLP
DADLARKALKPIERVLSSTSEEDEPGVVKFLKMNCRYFTDGKGVVGGVMIVTP
N
NIMFDPHKSDPLVIENGCEEYGLICPMEEVVSIALYNDISHMKIKDALP
SPGEWEDLASEKDINPFSKF
K
SINKEKRQQNGEKIMTSDSRPIVPLEKSTGHTPTKPSGSSVSEKLKKLDSSRETSHGSPTVTKLSKEPS
D
TSSAFESTAKENFLGEDDDFVDLEELSSQTGGGMHKKDTLKECLSLDPEERKKAESQINNSAVEMQVQS
A
LAFLGTENDVELKGALDLETCEKQDIMPEVDKQSGSPESRVENTLNIHEDLDKVKLIEYYLTKNKEGPQ
V
SENLQKTELSDGKSIEPGGIDITLSSSLSQAGDPITEGNKEPDKTWVKKGEPLPVKLNSSTEANVIKEA
L
DSSLESTLDNSCQGAQMDNKSEVQLWLLKRIQVPIE
DILPSKEEKSKTPPMFLCIKVGKPMRKSFATHT
A
AMVQQYGKRRKQPEYWFAVPRE
RVDHLYTFFVQWSPDVYGKDAKEQGFVVVEKEELNMIDNFFSEPTTK
S
WE
IITVEEAKRRKSTCSYYEDEDEEVLPVLRPHSALLENMHIEQLARRLPARVQGYPWRLAYSTLEHGT
S
LKTLYRKSASLDSPVLLVIKDMDNQ
IFGAYATHPFKFSDHYYGTGETFLYTFSPHFKVFKWSGENSYFI
N
GDISSLELGGG
GGRFGLWLDADLYHGRSNSCSTFNNDILSKKEDFIVQDLEVWAFD



Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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