CCDS Report for Consensus CDS

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Initial and Current statistics for Homo sapiens build 35.1

Initial and Current statistics for Homo sapiens build 36.2

Initial and Current statistics for Homo sapiens build 36.3

Initial and Current statistics for Homo sapiens build 37.1

Initial and Current statistics for Mus musculus build 36.1

Initial and Current statistics for Mus musculus build 37.1

Initial statistics for Homo sapiens for build 35.1

as of March 2, 2005

CCDS Totals

Category Count

CCDS IDs 14,795

Gene IDs 13,142

Sequence IDs 31,724

Sequence IDs by Organization

NCBI RefSeq 15,496

EBI,WTSI Records 16,228

GeneID

Genes with >1 CCDS ID 1,205

Genes with >6 CCDS IDs

Gene CCDS ID Count

CREM 9

ST3GAL3 9

BRCA1 8

TNFRSF25 8

ENSA 8

BIN1 7

PTGER3 7

DMD 7

NFE2L1 7

CAMK2B 7

FAS 7

CCDS IDs per chromosome

Chromosome Count

1 1638

2 917

3 778

4 518

5 615

6 849

7 634

8 486

9 613

10 635

11 812

12 782

13 262

14 461

15 387

16 599

17 826

18 203

19 966

20 571

21 178

22 365

X 649

Y 31

XY 20

Current statistics for Homo sapiens for build 35.1

as of March 14, 2007

CCDS Totals

Category Count

CCDS IDs 14,419

Gene IDs 12,950

Sequence IDs 30,922

Status

Public 13,740

Reviewed, update pending 171

Reviewed, withdrawal pending 3

Under review, update 324

Under review, withdrawal 181

Sequence IDs by Organization

NCBI RefSeq 15,106

EBI,WTSI Records 15,816

GeneID

Genes with >1 CCDS ID 1,095

Genes with >6 CCDS IDs

Gene CCDS ID Count

CREM 9

ST3GAL3 9

ENSA 8

CAMK2B 7

FAS 7

BIN1 7

PTGER3 7

DMD 7

BRCA1 7

CD46 7

CCDS IDs per chromosome

Chromosome Count

1 1,608

2 879

3 756

4 509

5 602

6 835

7 622

8 477

9 590

10 620

11 800

12 764

13 258

14 451

15 375

16 570

17 808

18 199

19 948

20 549

21 168

22 353

X 631

Y 29

XY 18

Initial statistics for Homo sapiens for build 36.2

as of February 26, 2007

CCDS Totals

Category Count

CCDS IDs 18,290

Gene IDs 16,008

Sequence IDs 51,388

Sequence IDs by Organization

NCBI RefSeq 19,360

EBI,WTSI Records 32,028

GeneID

Genes with >1 CCDS ID 1,708

Genes with >6 CCDS IDs

Gene CCDS ID Count

CREM 10

CD46 9

ST3GAL3 9

ENSA 8

PTGER3 8

DMD 7

BRCA1 7

BIN1 7

CAMK2B 7

FAS 7

CCDS IDs per chromosome

Chromosome Count

1 2,071

2 1,101

3 961

4 662

5 770

6 1,041

7 785

8 591

9 756

10 776

11 1,145

12 936

13 311

14 585

15 508

16 705

17 1,024

18 253

19 1,188

20 605

21 231

22 420

X 802

Y 44

XY 19

Current statistics for Homo sapiens for build 36.2

as of May 1, 2008

CCDS Totals

Category Count

CCDS IDs 17,997

Gene IDs 15,805

Sequence IDs 50,641

Status

Public 17,494

Reviewed, update pending 450

Under review, update 30

Under review, withdrawal 23

Sequence IDs by Organization

NCBI RefSeq 19,058

EBI,WTSI Records 31,583

GeneID

Genes with >1 CCDS ID 1,652

Genes with >6 CCDS IDs

Gene CCDS ID Count

CREM 10

CD46 9

ST3GAL3 9

ENSA 8

PTGER3 8

BIN1 7

FAS 7

BRCA1 7

CAMK2B 7

DMD 7

CCDS IDs per chromosome

Chromosome Count

1 2,037

2 1,078

3 949

4 652

5 766

6 1,021

7 769

8 583

9 736

10 770

11 1,133

12 926

13 302

14 575

15 502

16 697

17 1,013

18 249

19 1,171

20 589

21 214

22 413

X 790

Y 43

XY 19

Initial statistics for Homo sapiens for build 36.3

as of April 30, 2008

CCDS Totals

Category Count

CCDS IDs 20,159

Gene IDs 17,052

Sequence IDs 45,428

Sequence IDs by Organization

NCBI RefSeq 21,597

EBI,WTSI Records 23,831

GeneID

Genes with >1 CCDS ID 2,278

Genes with >6 CCDS IDs

Gene CCDS ID Count

PDE9A 13

CD46 11

CREM 10

BIN1 9

ST3GAL3 9

CAMK2B 8

ENSA 8

FCAR 8

PTGER3 8

FAS 7

BRCA1 7

CACNB2 7

DMD 7

OGG1 7

PLEC1 7

KCNIP2 7

PTPN20A 7

CCDS IDs per chromosome

Chromosome Count

1 2,245

2 1,233

3 1,078

4 726

5 868

6 1,112

7 891

8 652

9 823

10 844

11 1,259

12 1,035

13 332

14 650

15 559

16 798

17 1,147

18 287

19 1,320

20 629

21 273

22 457

X 874

Y 46

XY 21

Current statistics for Homo sapiens for build 36.3

as of September 2, 2009

CCDS Totals

Category Count

CCDS IDs 20,159

Gene IDs 17,053

Sequence IDs 45,428

Status

Public 19,393

Reviewed, update pending 408

Reviewed, withdrawal pending 190

Under review, update 87

Under review, withdrawal 81

Sequence IDs by Organization

NCBI RefSeq 21,597

EBI,WTSI Records 23,831

GeneID

Genes with >1 CCDS ID 2,278

Genes with >6 CCDS IDs

Gene CCDS ID Count

PDE9A 13

CD46 11

CREM 10

BIN1 9

ST3GAL3 9

CAMK2B 8

ENSA 8

FCAR 8

PTGER3 8

FAS 7

BRCA1 7

CACNB2 7

DMD 7

OGG1 7

PLEC1 7

KCNIP2 7

PTPN20A 7

CCDS IDs per chromosome

Chromosome Count

1 2,245

2 1,233

3 1,078

4 726

5 869

6 1,112

7 891

8 652

9 823

10 844

11 1,259

12 1,035

13 332

14 650

15 559

16 798

17 1,147

18 287

19 1,319

20 629

21 273

22 457

X 874

Y 46

XY 21

Initial statistics for Homo sapiens for build 37.1

as of September 2, 2009

CCDS Totals

Category Count

CCDS IDs 23,739

Gene IDs 18,177

Sequence IDs 55,807

Sequence IDs by Organization

NCBI RefSeq 25,909

EBI,WTSI Records 29,898

GeneID

Genes with >1 CCDS ID 3,806

Genes with >6 CCDS IDs

Gene CCDS ID Count

CACNA1C 15

PDE9A 13

CD46 12

DYSF 11

BIN1 10

COL13A1 10

CREM 10

ACRV1 9

FCAR 9

PTGER3 9

ST3GAL3 9

MADD 9

CACNA1G 9

CAMK2B 8

DMD 8

ENSA 8

MOG 8

OGG1 8

OPRM1 8

PAX3 8

PLEC1 8

PML 8

NR1I3 8

FAS 7

CACNB2 7

CAST 7

FGFR2 7

FN1 7

HFE 7

MEIS2 7

VEGFA 7

SPAG11B 7

KCNIP2 7

PTPN20A 7

CCDS IDs per chromosome

Chromosome Count

1 2,513

2 1,548

3 1,299

4 898

5 1,028

6 1,236

7 1,094

8 807

9 921

10 971

11 1,509

12 1,240

13 385

14 749

15 711

16 967

17 1,370

18 350

19 1,616

20 672

21 282

22 530

X 967

Y 53

XY 23

Current statistics for Homo sapiens for build 37.1

as of December 9, 2009

CCDS Totals

Category Count

CCDS IDs 23,739

Gene IDs 18,173

Sequence IDs 55,802

Status

Public 23,413

Reviewed, update pending 148

Reviewed, withdrawal pending 3

Under review, update 62

Under review, withdrawal 113

Sequence IDs by Organization

NCBI RefSeq 25,904

EBI,WTSI Records 29,898

GeneID

Genes with >1 CCDS ID 3,810

Genes with >6 CCDS IDs

Gene CCDS ID Count

CACNA1C 15

PDE9A 13

CD46 12

DYSF 11

BIN1 10

COL13A1 10

CREM 10

ACRV1 9

FCAR 9

PTGER3 9

ST3GAL3 9

MADD 9

CACNA1G 9

CAMK2B 8

DMD 8

ENSA 8

MOG 8

OGG1 8

OPRM1 8

PAX3 8

PLEC1 8

PML 8

NR1I3 8

FAS 7

CACNB2 7

CAST 7

FGFR2 7

FN1 7

HFE 7

MEIS2 7

VEGFA 7

SPAG11B 7

KCNIP2 7

PTPN20A 7

CCDS IDs per chromosome

Chromosome Count

1 2,513

2 1,548

3 1,299

4 898

5 1,028

6 1,236

7 1,094

8 807

9 921

10 971

11 1,509

12 1,240

13 385

14 749

15 711

16 967

17 1,370

18 350

19 1,616

20 672

21 282

22 530

X 967

Y 53

XY 23

Initial statistics for Mus musculus for build 36.1

as of October 10, 2006

CCDS Totals

Category Count

CCDS IDs 13,374

Gene IDs 13,014

Sequence IDs 27,909

Sequence IDs by Organization

NCBI RefSeq 13,517

EBI,WTSI Records 16,759

GeneID

Genes with >1 CCDS ID 297

Genes with >6 CCDS IDs

Gene CCDS ID Count

Kcnq2 8

CCDS IDs per chromosome

Chromosome Count

1 733

2 1,359

3 588

4 890

5 692

6 714

7 1,171

8 591

9 772

10 601

11 1,235

12 365

13 510

14 453

15 472

16 399

17 574

18 291

19 496

X 460

Y 8

Current statistics for Mus musculus for build 36.1

as of November 28, 2007

CCDS Totals

Category Count

CCDS IDs 13,374

Gene IDs 13,012

Sequence IDs 27,794

Status

Public 13,218

Reviewed, update pending 50

Reviewed, withdrawal pending 6

Under review, update 77

Under review, withdrawal 23

Sequence IDs by Organization

NCBI RefSeq 13,517

EBI,WTSI Records 14,277

GeneID

Genes with >1 CCDS ID 299

Genes with >6 CCDS IDs

Gene CCDS ID Count

Kcnq2 8

CCDS IDs per chromosome

Chromosome Count

1 733

2 1,359

3 588

4 890

5 692

6 714

7 1,171

8 591

9 772

10 601

11 1,235

12 365

13 510

14 453

15 472

16 399

17 574

18 291

19 496

X 460

Y 8

Initial statistics for Mus musculus for build 37.1

as of September 2, 2009

CCDS Totals

Category Count

CCDS IDs 17,707

Gene IDs 16,889

Sequence IDs 38,150

Sequence IDs by Organization

NCBI RefSeq 18,013

EBI,WTSI Records 20,137

GeneID

Genes with >1 CCDS ID 648

Genes with >6 CCDS IDs

Gene CCDS ID Count

Kcnq2 8

Mbp 7

CCDS IDs per chromosome

Chromosome Count

1 1,002

2 1,636

3 832

4 1,108

5 1,013

6 970

7 1,524

8 844

9 1,000

10 810

11 1,466

12 497

13 674

14 604

15 649

16 545

17 802

18 406

19 626

X 689

Y 10

Current statistics for Mus musculus for build 37.1

as of December 9, 2009

CCDS Totals

Category Count

CCDS IDs 17,707

Gene IDs 16,888

Sequence IDs 38,150

Status

Public 17,190

Reviewed, update pending 240

Reviewed, withdrawal pending 34

Under review, update 229

Under review, withdrawal 14

Sequence IDs by Organization

NCBI RefSeq 18,013

EBI,WTSI Records 20,137

GeneID

Genes with >1 CCDS ID 649

Genes with >6 CCDS IDs

Gene CCDS ID Count

Kcnq2 8

Mbp 7

CCDS IDs per chromosome

Chromosome Count

1 1,002

2 1,636

3 832

4 1,108

5 1,013

6 970

7 1,524

8 844

9 1,000

10 810

11 1,466

12 497

13 674

14 604

15 649

16 545

17 802

18 406

19 626

X 689

Y 10

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