CCDS Report for Consensus CDS

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CCDS Releases and Statistics

CCDS Release	Species	NCBI Annotation Release	Ensembl Annotation Release	Assembly Name	Assembly ID	Made Public	Statistics
1	Homo sapiens	35.1	23	NCBI35	GCF_000001405.11	03/02/2005	Initial Current
2	Mus musculus	36.1	39	MGSCv36	GCF_000001635.15	10/10/2006	Initial Current
3	Homo sapiens	36.2	41	NCBI36	GCF_000001405.12	02/26/2007	Initial Current
4	Mus musculus	37.1	47	MGSCv37	GCF_000001635.16	11/28/2007	Initial Current
5	Homo sapiens	36.3	47	NCBI36	GCF_000001405.12	04/30/2008	Initial Current
6	Homo sapiens	37.1	55	GRCh37	GCF_000001405.13	09/02/2009	Initial Current
7	Mus musculus	37.2	61	MGSCv37	GCF_000001635.18	01/24/2011	Initial Current
8	Homo sapiens	37.2	62	GRCh37.p2	GCF_000001405.14	04/20/2011	Initial Current
9	Homo sapiens	37.3	64	GRCh37.p5	GCF_000001405.17	09/07/2011	Initial Current
10	Mus musculus	38.1	68	GRCm38	GCF_000001635.20	08/14/2012	Initial Current
11	Homo sapiens	103	68	GRCh37.p9	GCF_000001405.21	10/25/2012	Initial Current
12	Homo sapiens	104	71	GRCh37.p10	GCF_000001405.22	04/30/2013	Initial Current

Initial statistics for Homo sapiens for CCDS Release 1

as of March 2, 2005

CCDS Totals

Category Count

CCDS IDs 14,795

Gene IDs 13,142

Sequence IDs 31,724

Sequence IDs by Organization

NCBI RefSeq 15,496

EBI,WTSI Records 16,228

GeneID

Genes with >1 CCDS ID 1,205

Genes with >6 CCDS IDs

Gene CCDS ID Count

CREM 9

ST3GAL3 9

BRCA1 8

TNFRSF25 8

ENSA 8

BIN1 7

PTGER3 7

DMD 7

NFE2L1 7

CAMK2B 7

FAS 7

CCDS IDs per chromosome

Chromosome Count

1 1638

2 917

3 778

4 518

5 615

6 849

7 634

8 486

9 613

10 635

11 812

12 782

13 262

14 461

15 387

16 599

17 826

18 203

19 966

20 571

21 178

22 365

X 649

Y 31

XY 20

Current statistics for Homo sapiens for CCDS Release 1

as of March 14, 2007

CCDS Totals

Category Count

CCDS IDs 14,419

Gene IDs 12,950

Sequence IDs 30,922

Status

Public 13,740

Reviewed, update pending 171

Reviewed, withdrawal pending 3

Under review, update 324

Under review, withdrawal 181

Sequence IDs by Organization

NCBI RefSeq 15,106

EBI,WTSI Records 15,816

GeneID

Genes with >1 CCDS ID 1,095

Genes with >6 CCDS IDs

Gene CCDS ID Count

CREM 9

ST3GAL3 9

ENSA 8

CAMK2B 7

FAS 7

BIN1 7

PTGER3 7

DMD 7

BRCA1 7

CD46 7

CCDS IDs per chromosome

Chromosome Count

1 1,608

2 879

3 756

4 509

5 602

6 835

7 622

8 477

9 590

10 620

11 800

12 764

13 258

14 451

15 375

16 570

17 808

18 199

19 948

20 549

21 168

22 353

X 631

Y 29

XY 18

Initial statistics for Homo sapiens for CCDS Release 3

as of February 26, 2007

CCDS Totals

Category Count

CCDS IDs 18,290

Gene IDs 16,008

Sequence IDs 51,388

Sequence IDs by Organization

NCBI RefSeq 19,360

EBI,WTSI Records 32,028

GeneID

Genes with >1 CCDS ID 1,708

Genes with >6 CCDS IDs

Gene CCDS ID Count

CREM 10

CD46 9

ST3GAL3 9

ENSA 8

PTGER3 8

DMD 7

BRCA1 7

BIN1 7

CAMK2B 7

FAS 7

CCDS IDs per chromosome

Chromosome Count

1 2,071

2 1,101

3 961

4 662

5 770

6 1,041

7 785

8 591

9 756

10 776

11 1,145

12 936

13 311

14 585

15 508

16 705

17 1,024

18 253

19 1,188

20 605

21 231

22 420

X 802

Y 44

XY 19

Current statistics for Homo sapiens for CCDS Release 3

as of May 1, 2008

CCDS Totals

Category Count

CCDS IDs 17,997

Gene IDs 15,805

Sequence IDs 50,641

Status

Public 17,494

Reviewed, update pending 450

Under review, update 30

Under review, withdrawal 23

Sequence IDs by Organization

NCBI RefSeq 19,058

EBI,WTSI Records 31,583

GeneID

Genes with >1 CCDS ID 1,652

Genes with >6 CCDS IDs

Gene CCDS ID Count

CREM 10

CD46 9

ST3GAL3 9

ENSA 8

PTGER3 8

BIN1 7

FAS 7

BRCA1 7

CAMK2B 7

DMD 7

CCDS IDs per chromosome

Chromosome Count

1 2,037

2 1,078

3 949

4 652

5 766

6 1,021

7 769

8 583

9 736

10 770

11 1,133

12 926

13 302

14 575

15 502

16 697

17 1,013

18 249

19 1,171

20 589

21 214

22 413

X 790

Y 43

XY 19

Initial statistics for Homo sapiens for CCDS Release 5

as of April 30, 2008

CCDS Totals

Category Count

CCDS IDs 20,159

Gene IDs 17,052

Sequence IDs 45,428

Sequence IDs by Organization

NCBI RefSeq 21,597

EBI,WTSI Records 23,831

GeneID

Genes with >1 CCDS ID 2,278

Genes with >6 CCDS IDs

Gene CCDS ID Count

PDE9A 13

CD46 11

CREM 10

BIN1 9

ST3GAL3 9

CAMK2B 8

ENSA 8

FCAR 8

PTGER3 8

FAS 7

BRCA1 7

CACNB2 7

DMD 7

OGG1 7

PLEC1 7

KCNIP2 7

PTPN20A 7

CCDS IDs per chromosome

Chromosome Count

1 2,245

2 1,233

3 1,078

4 726

5 868

6 1,112

7 891

8 652

9 823

10 844

11 1,259

12 1,035

13 332

14 650

15 559

16 798

17 1,147

18 287

19 1,320

20 629

21 273

22 457

X 874

Y 46

XY 21

Current statistics for Homo sapiens for CCDS Release 5

as of September 2, 2009

CCDS Totals

Category Count

CCDS IDs 20,159

Gene IDs 17,053

Sequence IDs 45,428

Status

Public 19,393

Reviewed, update pending 408

Reviewed, withdrawal pending 190

Under review, update 87

Under review, withdrawal 81

Sequence IDs by Organization

NCBI RefSeq 21,597

EBI,WTSI Records 23,831

GeneID

Genes with >1 CCDS ID 2,278

Genes with >6 CCDS IDs

Gene CCDS ID Count

PDE9A 13

CD46 11

CREM 10

BIN1 9

ST3GAL3 9

CAMK2B 8

ENSA 8

FCAR 8

PTGER3 8

FAS 7

BRCA1 7

CACNB2 7

DMD 7

OGG1 7

PLEC1 7

KCNIP2 7

PTPN20A 7

CCDS IDs per chromosome

Chromosome Count

1 2,245

2 1,233

3 1,078

4 726

5 869

6 1,112

7 891

8 652

9 823

10 844

11 1,259

12 1,035

13 332

14 650

15 559

16 798

17 1,147

18 287

19 1,319

20 629

21 273

22 457

X 874

Y 46

XY 21

Initial statistics for Homo sapiens for CCDS Release 6

as of September 2, 2009

CCDS Totals

Category Count

CCDS IDs 23,739

Gene IDs 18,177

Sequence IDs 55,807

Sequence IDs by Organization

NCBI RefSeq 25,909

EBI,WTSI Records 29,898

GeneID

Genes with >1 CCDS ID 3,806

Genes with >6 CCDS IDs

Gene CCDS ID Count

CACNA1C 15

PDE9A 13

CD46 12

DYSF 11

BIN1 10

COL13A1 10

CREM 10

ACRV1 9

FCAR 9

PTGER3 9

ST3GAL3 9

MADD 9

CACNA1G 9

CAMK2B 8

DMD 8

ENSA 8

MOG 8

OGG1 8

OPRM1 8

PAX3 8

PLEC1 8

PML 8

NR1I3 8

FAS 7

CACNB2 7

CAST 7

FGFR2 7

FN1 7

HFE 7

MEIS2 7

VEGFA 7

SPAG11B 7

KCNIP2 7

PTPN20A 7

CCDS IDs per chromosome

Chromosome Count

1 2,513

2 1,548

3 1,299

4 898

5 1,028

6 1,236

7 1,094

8 807

9 921

10 971

11 1,509

12 1,240

13 385

14 749

15 711

16 967

17 1,370

18 350

19 1,616

20 672

21 282

22 530

X 967

Y 53

XY 23

Current statistics for Homo sapiens for CCDS Release 6

as of April 20, 2011

CCDS Totals

Category Count

CCDS IDs 23,739

Gene IDs 18,174

Sequence IDs 55,802

Status

Public 22,912

Reviewed, update pending 340

Reviewed, withdrawal pending 400

Under review, update 39

Under review, withdrawal 48

Sequence IDs by Organization

NCBI RefSeq 25,904

EBI,WTSI Records 29,898

GeneID

Genes with >1 CCDS ID 3,810

Genes with >6 CCDS IDs

Gene CCDS ID Count

CACNA1C 15

PDE9A 13

CD46 12

DYSF 11

BIN1 10

COL13A1 10

CREM 10

ACRV1 9

FCAR 9

PTGER3 9

ST3GAL3 9

MADD 9

CACNA1G 9

CAMK2B 8

DMD 8

ENSA 8

MOG 8

OGG1 8

OPRM1 8

PAX3 8

PLEC 8

PML 8

NR1I3 8

FAS 7

CACNB2 7

CAST 7

FGFR2 7

FN1 7

HFE 7

MEIS2 7

VEGFA 7

SPAG11B 7

KCNIP2 7

PTPN20A 7

CCDS IDs per chromosome

Chromosome Count

1 2,513

2 1,548

3 1,299

4 898

5 1,028

6 1,236

7 1,094

8 807

9 921

10 971

11 1,509

12 1,240

13 385

14 749

15 711

16 967

17 1,370

18 350

19 1,616

20 672

21 282

22 530

X 967

Y 53

XY 23

Initial statistics for Homo sapiens for CCDS Release 8

as of April 20, 2011

CCDS Totals

Category Count

CCDS IDs 25,564

Gene IDs 18,409

Sequence IDs 60,637

Sequence IDs by Organization

NCBI RefSeq 28,259

EBI,WTSI Records 32,378

GeneID

Genes with >1 CCDS ID 4,622

Genes with >6 CCDS IDs

Gene CCDS ID Count

CACNA1C 19

CREM 17

VEGFA 16

NR1I3 15

CACNA1G 14

CD1E 13

PDE9A 13

OPRM1 12

DYSF 11

BIN1 10

ASPH 10

DMD 10

ST3GAL3 10

CTNND1 9

FCAR 9

HFE 9

MOG 9

MADD 9

ABI1 9

PTPN20B 9

PARD3 9

DMKN 9

PTPN20A 9

ABL2 8

CAMK2B 8

ENSA 8

FGFR2 8

NRG1 8

CD46 8

MYB 8

OGG1 8

PAX3 8

PLEC 8

PML 8

SCP2 8

BCAR1 8

GPR64 8

TNIK 8

PCDH11X 8

SYTL2 8

MIER1 8

CMTM1 8

CACNB2 7

CSF2RA 7

FGFR1 7

MBNL1 7

MEIS2 7

SORBS2 7

SPAG11B 7

KCNIP2 7

ABLIM2 7

FCRLA 7

SIGLEC10 7

ZFYVE27 7

CCDS IDs per chromosome

Chromosome Count

1 2,682

2 1,627

3 1,435

4 980

5 1,124

6 1,341

7 1,179

8 861

9 997

10 1,043

11 1,598

12 1,356

13 410

14 776

15 758

16 1,032

17 1,472

18 360

19 1,739

20 707

21 297

22 576

X 1,128

Y 57

XY 29

Current statistics for Homo sapiens for CCDS Release 8

as of September 6, 2011

CCDS Totals

Category Count

CCDS IDs 25,564

Gene IDs 18,407

Sequence IDs 60,637

Status

Public 25,354

Reviewed, update pending 92

Reviewed, withdrawal pending 63

Under review, update 18

Under review, withdrawal 37

Sequence IDs by Organization

NCBI RefSeq 28,259

EBI,WTSI Records 32,378

GeneID

Genes with >1 CCDS ID 4,624

Genes with >6 CCDS IDs

Gene CCDS ID Count

CACNA1C 19

CREM 17

VEGFA 16

NR1I3 15

CACNA1G 14

CD1E 13

PDE9A 13

OPRM1 12

DYSF 11

BIN1 10

ASPH 10

DMD 10

ST3GAL3 10

CTNND1 9

FCAR 9

HFE 9

MOG 9

MADD 9

ABI1 9

PTPN20B 9

PARD3 9

DMKN 9

PTPN20A 9

ABL2 8

CAMK2B 8

ENSA 8

FGFR2 8

NRG1 8

CD46 8

MYB 8

OGG1 8

PAX3 8

PLEC 8

PML 8

SCP2 8

BCAR1 8

GPR64 8

TNIK 8

PCDH11X 8

SYTL2 8

MIER1 8

CMTM1 8

CACNB2 7

CSF2RA 7

FGFR1 7

MBNL1 7

MEIS2 7

SORBS2 7

SPAG11B 7

KCNIP2 7

ABLIM2 7

FCRLA 7

SIGLEC10 7

ZFYVE27 7

CCDS IDs per chromosome

Chromosome Count

1 2,682

2 1,627

3 1,435

4 980

5 1,124

6 1,341

7 1,179

8 861

9 997

10 1,043

11 1,598

12 1,356

13 410

14 776

15 758

16 1,032

17 1,472

18 360

19 1,739

20 707

21 297

22 576

X 1,128

Y 57

XY 29

Initial statistics for Homo sapiens for CCDS Release 9

as of September 7, 2011

CCDS Totals

Category Count

CCDS IDs 26,473

Gene IDs 18,471

Sequence IDs 63,178

Sequence IDs by Organization

NCBI RefSeq 29,557

EBI,WTSI Records 33,621

GeneID

Genes with >1 CCDS ID 4,999

Genes with >6 CCDS IDs

Gene CCDS ID Count

CACNA1C 19

CREM 17

VEGFA 16

NR1I3 15

CTNND1 14

CACNA1G 14

CD1E 13

PDE9A 13

OPRM1 12

DYSF 11

BIN1 10

ASPH 10

DTNA 10

ST3GAL3 10

FCAR 9

HFE 9

MOG 9

MADD 9

ABI1 9

BCL2L11 9

PTPN20B 9

PARD3 9

ANKS1B 9

DMKN 9

PTPN20A 9

ABL2 8

APP 8

CAMK2B 8

ENSA 8

FGFR2 8

NRG1 8

MBD1 8

CD46 8

MUC1 8

MYB 8

OGG1 8

PAX3 8

PDE4D 8

PLEC 8

PML 8

SCP2 8

TP73 8

PPFIA2 8

BCAR1 8

HDAC9 8

GPR64 8

TNIK 8

ATP2C1 8

PCDH11X 8

SYTL2 8

MIER1 8

CMTM1 8

CACNB2 7

CD44 7

CSF2RA 7

DMD 7

FGFR1 7

BRF1 7

MAPT 7

MBNL1 7

MEIS2 7

ODF2 7

PCBP2 7

SORBS2 7

DGKZ 7

DLGAP1 7

PDE4DIP 7

SPAG11B 7

KCNIP2 7

SPOCK3 7

ABLIM2 7

FCRLA 7

SIGLEC10 7

WDR20 7

ZFYVE27 7

SGOL1 7

CCDS IDs per chromosome

Chromosome Count

1 2,816

2 1,686

3 1,500

4 1,005

5 1,159

6 1,401

7 1,235

8 892

9 1,028

10 1,077

11 1,656

12 1,432

13 420

14 820

15 772

16 1,056

17 1,505

18 382

19 1,769

20 733

21 312

22 590

X 1,139

Y 59

XY 29

Current statistics for Homo sapiens for CCDS Release 9

as of October 25, 2012

CCDS Totals

Category Count

CCDS IDs 26,473

Gene IDs 18,474

Sequence IDs 63,189

Status

Public 26,254

Reviewed, update pending 67

Reviewed, withdrawal pending 84

Under review, update 8

Under review, withdrawal 60

Sequence IDs by Organization

NCBI RefSeq 29,568

EBI,WTSI Records 33,621

GeneID

Genes with >1 CCDS ID 5,000

Genes with >6 CCDS IDs

Gene CCDS ID Count

CACNA1C 19

CREM 17

VEGFA 16

NR1I3 15

CTNND1 14

CACNA1G 14

CD1E 13

PDE9A 13

OPRM1 12

DYSF 11

BIN1 10

ASPH 10

DTNA 10

ST3GAL3 10

FCAR 9

HFE 9

MOG 9

MADD 9

ABI1 9

BCL2L11 9

PTPN20B 9

PARD3 9

ANKS1B 9

DMKN 9

PTPN20A 9

ABL2 8

APP 8

CAMK2B 8

ENSA 8

FGFR2 8

NRG1 8

MBD1 8

CD46 8

MUC1 8

MYB 8

OGG1 8

PAX3 8

PDE4D 8

PLEC 8

PML 8

SCP2 8

TP73 8

PPFIA2 8

BCAR1 8

HDAC9 8

GPR64 8

TNIK 8

ATP2C1 8

PCDH11X 8

SYTL2 8

MIER1 8

CMTM1 8

CACNB2 7

CD44 7

CSF2RA 7

DMD 7

FGFR1 7

BRF1 7

MAPT 7

MBNL1 7

MEIS2 7

ODF2 7

PCBP2 7

SORBS2 7

DGKZ 7

DLGAP1 7

PDE4DIP 7

SPAG11B 7

KCNIP2 7

SPOCK3 7

ABLIM2 7

FCRLA 7

SIGLEC10 7

WDR20 7

ZFYVE27 7

SGOL1 7

CCDS IDs per chromosome

Chromosome Count

1 2,816

2 1,686

3 1,500

4 1,005

5 1,159

6 1,401

7 1,235

8 892

9 1,028

10 1,077

11 1,656

12 1,432

13 420

14 820

15 772

16 1,056

17 1,505

18 382

19 1,769

20 733

21 312

22 590

X 1,139

Y 59

XY 29

Initial statistics for Homo sapiens for CCDS Release 11

as of October 25, 2012

CCDS Totals

Category Count

CCDS IDs 27,511

Gene IDs 18,535

Sequence IDs 66,261

Sequence IDs by Organization

NCBI RefSeq 30,951

EBI,WTSI Records 35,310

GeneID

Genes with >1 CCDS ID 5,420

Genes with >6 CCDS IDs

Gene CCDS ID Count

CACNA1G 25

CACNA1C 19

CREM 18

ST3GAL3 17

VEGFA 16

NR1I3 15

CTNND1 14

CD1E 13

PDE9A 13

IKZF3 13

OPRM1 12

TCF4 11

DYSF 11

BIN1 10

ASPH 10

DTNA 10

MYBPC1 10

FCAR 9

HFE 9

MOG 9

PML 9

MADD 9

ABI1 9

BCL2L11 9

PTPN20B 9

PARD3 9

ANKS1B 9

DMKN 9

PTPN20A 9

ABL2 8

APP 8

CAMK2B 8

ENSA 8

FGFR2 8

NRG1 8

MBD1 8

CD46 8

MUC1 8

MYB 8

OGG1 8

PAX3 8

PDE4D 8

PLEC 8

SCP2 8

TP73 8

PPFIA2 8

ADAM15 8

BCAR1 8

HDAC9 8

MELK 8

GPR64 8

PDLIM5 8

OS9 8

TNIK 8

ATP2C1 8

PCDH11X 8

SPOCK3 8

PEX5L 8

SYTL2 8

MIER1 8

COLEC11 8

CMTM1 8

CTCFL 8

CACNB2 7

CD44 7

CSF2RA 7

CUX1 7

DMD 7

FDXR 7

FGFR1 7

BRF1 7

MAPT 7

MBNL1 7

MEIS2 7

ODF2 7

PCBP2 7

TPD52L2 7

TPM1 7

SORBS2 7

DGKZ 7

DLGAP1 7

PDE4DIP 7

RTN3 7

SPAG11B 7

CAMKK2 7

KCNIP2 7

ABLIM2 7

FCRLA 7

SIGLEC10 7

WDR20 7

ZFYVE27 7

SGOL1 7

HSD11B1L 7

CCDS IDs per chromosome

Chromosome Count

1 2,914

2 1,751

3 1,558

4 1,048

5 1,207

6 1,445

7 1,266

8 916

9 1,063

10 1,110

11 1,738

12 1,519

13 431

14 852

15 821

16 1,131

17 1,607

18 401

19 1,809

20 756

21 318

22 605

X 1,155

Y 59

XY 31

Current statistics for Homo sapiens for CCDS Release 11

as of April 29, 2013

CCDS Totals

Category Count

CCDS IDs 27,510

Gene IDs 18,535

Sequence IDs 66,271

Status

Public 27,377

Reviewed, update pending 39

Reviewed, withdrawal pending 61

Under review, update 13

Under review, withdrawal 20

Sequence IDs by Organization

NCBI RefSeq 30,962

EBI,WTSI Records 35,309

GeneID

Genes with >1 CCDS ID 5,420

Genes with >6 CCDS IDs

Gene CCDS ID Count

CACNA1G 25

CACNA1C 19

CREM 18

ST3GAL3 17

VEGFA 16

NR1I3 15

CTNND1 14

CD1E 13

PDE9A 13

IKZF3 13

OPRM1 12

TCF4 11

DYSF 11

BIN1 10

ASPH 10

DTNA 10

MYBPC1 10

FCAR 9

HFE 9

MOG 9

PML 9

MADD 9

ABI1 9

BCL2L11 9

PTPN20B 9

PARD3 9

ANKS1B 9

DMKN 9

PTPN20A 9

ABL2 8

APP 8

CAMK2B 8

ENSA 8

FGFR2 8

NRG1 8

MBD1 8

CD46 8

MUC1 8

MYB 8

OGG1 8

PAX3 8

PDE4D 8

PLEC 8

SCP2 8

TP73 8

PPFIA2 8

ADAM15 8

BCAR1 8

HDAC9 8

MELK 8

GPR64 8

PDLIM5 8

OS9 8

TNIK 8

ATP2C1 8

PCDH11X 8

SPOCK3 8

PEX5L 8

SYTL2 8

MIER1 8

COLEC11 8

CMTM1 8

CTCFL 8

CACNB2 7

CD44 7

CSF2RA 7

CUX1 7

DMD 7

FDXR 7

FGFR1 7

BRF1 7

MAPT 7

MBNL1 7

MEIS2 7

ODF2 7

PCBP2 7

TPD52L2 7

TPM1 7

SORBS2 7

DGKZ 7

DLGAP1 7

PDE4DIP 7

RTN3 7

SPAG11B 7

CAMKK2 7

KCNIP2 7

ABLIM2 7

FCRLA 7

SIGLEC10 7

WDR20 7

ZFYVE27 7

SGOL1 7

HSD11B1L 7

CCDS IDs per chromosome

Chromosome Count

1 2,914

2 1,751

3 1,558

4 1,048

5 1,207

6 1,445

7 1,266

8 916

9 1,063

10 1,109

11 1,738

12 1,519

13 431

14 852

15 821

16 1,131

17 1,607

18 401

19 1,809

20 756

21 318

22 605

X 1,155

Y 59

XY 31

Initial statistics for Homo sapiens for CCDS Release 12

as of April 30, 2013

CCDS Totals

Category Count

CCDS IDs 27,752

Gene IDs 18,606

Sequence IDs 67,105

Sequence IDs by Organization

NCBI RefSeq 31,233

EBI,WTSI Records 35,872

GeneID

Genes with >1 CCDS ID 5,478

Genes with >6 CCDS IDs

Gene CCDS ID Count

CACNA1G 25

CACNA1C 19

CREM 18

ST3GAL3 17

VEGFA 16

NR1I3 15

CTNND1 14

DTNA 14

CD1E 13

PDE9A 13

IKZF3 13

OPRM1 12

TCF4 12

MBD1 11

DYSF 11

BIN1 10

ASPH 10

MYBPC1 10

FCAR 9

HFE 9

MOG 9

PML 9

PPFIA2 9

MADD 9

ABI1 9

BCL2L11 9

PTPN20B 9

DISC1 9

PARD3 9

ANKS1B 9

DMKN 9

PTPN20A 9

ABL2 8

APP 8

CAMK2B 8

ENSA 8

FGFR2 8

NRG1 8

CD46 8

MUC1 8

MYB 8

OGG1 8

PAX3 8

PDE4D 8

PLEC 8

SCP2 8

TP73 8

SORBS2 8

ADAM15 8

BCAR1 8

HDAC9 8

MELK 8

GPR64 8

PDLIM5 8

OS9 8

TNIK 8

ATP2C1 8

PCDH11X 8

SPOCK3 8

PEX5L 8

SYTL2 8

MIER1 8

COLEC11 8

CMTM1 8

CTCFL 8

RDM1 8

CACNB2 7

CD44 7

CSF2RA 7

CUX1 7

DMD 7

FDXR 7

FGFR1 7

BRF1 7

MAPT 7

MBNL1 7

MEIS2 7

ODF2 7

PCBP2 7

TPD52L2 7

TPM1 7

DGKZ 7

DLGAP1 7

PDE4DIP 7

RTN3 7

CAMKK2 7

ZNF268 7

NEDD4L 7

KCNIP2 7

CD209 7

ABLIM2 7

FCRLA 7

WDR20 7

RASGRP4 7

ZFYVE27 7

SGOL1 7

HSD11B1L 7

CCDS IDs per chromosome

Chromosome Count

1 2,927

2 1,761

3 1,561

4 1,074

5 1,216

6 1,448

7 1,271

8 915

9 1,066

10 1,120

11 1,744

12 1,523

13 432

14 852

15 823

16 1,146

17 1,631

18 418

19 1,893

20 756

21 320

22 605

X 1,159

Y 60

XY 31

Current statistics for Homo sapiens for CCDS Release 12

as of May 22, 2013

CCDS Totals

Category Count

CCDS IDs 27,752

Gene IDs 18,606

Sequence IDs 67,109

Status

Public 27,702

Reviewed, update pending 9

Under review, update 19

Under review, withdrawal 22

Sequence IDs by Organization

NCBI RefSeq 31,237

EBI,WTSI Records 35,872

GeneID

Genes with >1 CCDS ID 5,478

Genes with >6 CCDS IDs

Gene CCDS ID Count

CACNA1G 25

CACNA1C 19

CREM 18

ST3GAL3 17

VEGFA 16

NR1I3 15

CTNND1 14

DTNA 14

CD1E 13

PDE9A 13

IKZF3 13

OPRM1 12

TCF4 12

MBD1 11

DYSF 11

BIN1 10

ASPH 10

MYBPC1 10

FCAR 9

HFE 9

MOG 9

PML 9

PPFIA2 9

MADD 9

ABI1 9

BCL2L11 9

PTPN20B 9

DISC1 9

PARD3 9

ANKS1B 9

DMKN 9

PTPN20A 9

ABL2 8

APP 8

CAMK2B 8

ENSA 8

FGFR2 8

NRG1 8

CD46 8

MUC1 8

MYB 8

OGG1 8

PAX3 8

PDE4D 8

PLEC 8

SCP2 8

TP73 8

SORBS2 8

ADAM15 8

BCAR1 8

HDAC9 8

MELK 8

GPR64 8

PDLIM5 8

OS9 8

TNIK 8

ATP2C1 8

PCDH11X 8

SPOCK3 8

PEX5L 8

SYTL2 8

MIER1 8

COLEC11 8

CMTM1 8

CTCFL 8

RDM1 8

CACNB2 7

CD44 7

CSF2RA 7

CUX1 7

DMD 7

FDXR 7

FGFR1 7

BRF1 7

MAPT 7

MBNL1 7

MEIS2 7

ODF2 7

PCBP2 7

TPD52L2 7

TPM1 7

DGKZ 7

DLGAP1 7

PDE4DIP 7

RTN3 7

CAMKK2 7

ZNF268 7

NEDD4L 7

KCNIP2 7

CD209 7

ABLIM2 7

FCRLA 7

WDR20 7

RASGRP4 7

ZFYVE27 7

SGOL1 7

HSD11B1L 7

CCDS IDs per chromosome

Chromosome Count

1 2,927

2 1,761

3 1,561

4 1,074

5 1,216

6 1,448

7 1,271

8 915

9 1,066

10 1,120

11 1,744

12 1,523

13 432

14 852

15 823

16 1,146

17 1,631

18 418

19 1,893

20 756

21 320

22 605

X 1,159

Y 60

XY 31

Initial statistics for Mus musculus for CCDS Release 2

as of October 10, 2006

CCDS Totals

Category Count

CCDS IDs 13,374

Gene IDs 13,014

Sequence IDs 27,909

Sequence IDs by Organization

NCBI RefSeq 13,517

EBI,WTSI Records 16,759

GeneID

Genes with >1 CCDS ID 297

Genes with >6 CCDS IDs

Gene CCDS ID Count

Kcnq2 8

CCDS IDs per chromosome

Chromosome Count

1 733

2 1,359

3 588

4 890

5 692

6 714

7 1,171

8 591

9 772

10 601

11 1,235

12 365

13 510

14 453

15 472

16 399

17 574

18 291

19 496

X 460

Y 8

Current statistics for Mus musculus for CCDS Release 2

as of November 28, 2007

CCDS Totals

Category Count

CCDS IDs 13,374

Gene IDs 13,012

Sequence IDs 27,794

Status

Public 13,218

Reviewed, update pending 50

Reviewed, withdrawal pending 6

Under review, update 77

Under review, withdrawal 23

Sequence IDs by Organization

NCBI RefSeq 13,517

EBI,WTSI Records 14,277

GeneID

Genes with >1 CCDS ID 299

Genes with >6 CCDS IDs

Gene CCDS ID Count

Kcnq2 8

CCDS IDs per chromosome

Chromosome Count

1 733

2 1,359

3 588

4 890

5 692

6 714

7 1,171

8 591

9 772

10 601

11 1,235

12 365

13 510

14 453

15 472

16 399

17 574

18 291

19 496

X 460

Y 8

Initial statistics for Mus musculus for CCDS Release 4

as of November 28, 2007

CCDS Totals

Category Count

CCDS IDs 17,707

Gene IDs 16,893

Sequence IDs 38,150

Sequence IDs by Organization

NCBI RefSeq 18,013

EBI,WTSI Records 20,137

GeneID

Genes with >1 CCDS ID 644

Genes with >6 CCDS IDs

Gene CCDS ID Count

Kcnq2 8

Mbp 7

CCDS IDs per chromosome

Chromosome Count

1 1,002

2 1,636

3 832

4 1,108

5 1,013

6 970

7 1,524

8 844

9 1,000

10 810

11 1,466

12 497

13 674

14 604

15 649

16 545

17 802

18 406

19 626

X 689

Y 10

Current statistics for Mus musculus for CCDS Release 4

as of January 24, 2011

CCDS Totals

Category Count

CCDS IDs 17,707

Gene IDs 16,888

Sequence IDs 38,150

Status

Public 17,082

Reviewed, update pending 333

Reviewed, withdrawal pending 84

Under review, update 199

Under review, withdrawal 9

Sequence IDs by Organization

NCBI RefSeq 18,013

EBI,WTSI Records 20,137

GeneID

Genes with >1 CCDS ID 649

Genes with >6 CCDS IDs

Gene CCDS ID Count

Kcnq2 8

Mbp 7

CCDS IDs per chromosome

Chromosome Count

1 1,002

2 1,636

3 832

4 1,108

5 1,013

6 970

7 1,524

8 844

9 1,000

10 810

11 1,466

12 497

13 674

14 604

15 649

16 545

17 802

18 406

19 626

X 689

Y 10

Initial statistics for Mus musculus for CCDS Release 7

as of January 24, 2011

CCDS Totals

Category Count

CCDS IDs 22,187

Gene IDs 19,509

Sequence IDs 49,989

Sequence IDs by Organization

NCBI RefSeq 23,481

EBI,WTSI Records 26,508

GeneID

Genes with >1 CCDS ID 1,985

Genes with >6 CCDS IDs

Gene CCDS ID Count

Kcnq2 12

Plec 11

Asph 10

Tpm1 9

Smox 9

Crem 8

Tcf3 8

Tnnt3 8

Madd 8

Gnas 7

Mbp 7

Tcf7l2 7

Mapk8ip3 7

Gtf2ird1 7

Whrn 7

CCDS IDs per chromosome

Chromosome Count

1 1,257

2 1,990

3 1,056

4 1,379

5 1,270

6 1,200

7 1,967

8 1,075

9 1,233

10 1,023

11 1,712

12 661

13 815

14 747

15 803

16 713

17 1,064

18 524

19 764

X 922

Y 12

Current statistics for Mus musculus for CCDS Release 7

as of August 14, 2012

CCDS Totals

Category Count

CCDS IDs 22,187

Gene IDs 19,507

Sequence IDs 49,990

Status

Public 21,874

Reviewed, update pending 215

Reviewed, withdrawal pending 56

Under review, update 18

Under review, withdrawal 24

Sequence IDs by Organization

NCBI RefSeq 23,482

EBI,WTSI Records 26,508

GeneID

Genes with >1 CCDS ID 1,987

Genes with >6 CCDS IDs

Gene CCDS ID Count

Kcnq2 12

Plec 11

Asph 10

Tpm1 9

Smox 9

Crem 8

Tcf3 8

Tnnt3 8

Madd 8

Gnas 7

Mbp 7

Tcf7l2 7

Mapk8ip3 7

Gtf2ird1 7

Whrn 7

CCDS IDs per chromosome

Chromosome Count

1 1,257

2 1,990

3 1,056

4 1,379

5 1,270

6 1,200

7 1,967

8 1,075

9 1,233

10 1,023

11 1,712

12 661

13 815

14 747

15 803

16 713

17 1,064

18 524

19 764

X 922

Y 12

Initial statistics for Mus musculus for CCDS Release 10

as of August 14, 2012

CCDS Totals

Category Count

CCDS IDs 23,027

Gene IDs 19,945

Sequence IDs 52,084

Sequence IDs by Organization

NCBI RefSeq 24,597

EBI,WTSI Records 27,487

GeneID

Genes with >1 CCDS ID 2,265

Genes with >6 CCDS IDs

Gene CCDS ID Count

Pcdh15 14

Kcnq2 12

Plec 11

Asph 10

Tpm1 9

Smox 9

Crem 8

Tcf3 8

Tnnt3 8

Hdac7 8

Gnas 7

Mbp 7

Tcf7l2 7

Mapk8ip3 7

Gtf2ird1 7

Whrn 7

CCDS IDs per chromosome

Chromosome Count

1 1,293

2 2,018

3 1,104

4 1,426

5 1,326

6 1,256

7 2,050

8 1,117

9 1,285

10 1,071

11 1,778

12 696

13 846

14 786

15 839

16 733

17 1,116

18 534

19 780

X 959

Y 14

Current statistics for Mus musculus for CCDS Release 10

as of May 22, 2013

CCDS Totals

Category Count

CCDS IDs 23,027

Gene IDs 19,945

Sequence IDs 52,095

Status

Public 22,939

Reviewed, update pending 44

Reviewed, withdrawal pending 30

Under review, update 12

Under review, withdrawal 2

Sequence IDs by Organization

NCBI RefSeq 24,608

EBI,WTSI Records 27,487

GeneID

Genes with >1 CCDS ID 2,265

Genes with >6 CCDS IDs

Gene CCDS ID Count

Pcdh15 14

Kcnq2 12

Plec 11

Asph 10

Tpm1 9

Smox 9

Crem 8

Tcf3 8

Tnnt3 8

Hdac7 8

Gnas 7

Mbp 7

Tcf7l2 7

Mapk8ip3 7

Gtf2ird1 7

Whrn 7

CCDS IDs per chromosome

Chromosome Count

1 1,293

2 2,018

3 1,104

4 1,426

5 1,326

6 1,256

7 2,050

8 1,117

9 1,285

10 1,071

11 1,778

12 696

13 846

14 786

15 839

16 733

17 1,116

18 534

19 780

X 959

Y 14

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