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Report for CCDS1520.2 (previous version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1520.2 Public Homo sapiens 1 RRP15 14 105 73 CCDS HistoryNCBI Gene:51018Re-query CCDS DB by CCDS ID:1520.2Re-query CCDS DB by GeneID:51018

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Sequence IDs included in CCDS 1520.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member EBI ENST00000366932 ENSP00000355899 Accepted not alive Link to Ensembl Transcript Viewer:ENST00000366932Link to Ensembl Protein Viewer:ENSP00000355899Re-query CCDS DB by Nucleotide ID:ENST00000366932Re-query CCDS DB by Protein ID:ENSP00000355899
Original member Current member EBI OTTHUMT00000095284 OTTHUMP00000037485 Accepted alive Link to Vega Transcript Viewer:OTTHUMT00000095284Link to Vega Protein Viewer:OTTHUMP00000037485Re-query CCDS DB by Nucleotide ID:OTTHUMT00000095284Re-query CCDS DB by Protein ID:OTTHUMP00000037485
Original member NCBI NM_016052.3 NP_057136.2 Accepted not alive Link to Nucleotide Sequence:NM_016052.3Link to Protein Sequence:NP_057136.2Re-query CCDS DB by Nucleotide ID:NM_016052Re-query CCDS DB by Protein ID:NP_057136Link to BLAST:NP_057136.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057136.2 282 Q9Y3B9 282 100% 0 0

Chromosomal Locations for CCDS 1520.2

Assembly GRCh37.p13 (GCF_000001405.25)

On '+' strand of Chromosome 1 (NC_000001.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1Link to Vega Genome Browser on chromosome 1

Chromosome Start Stop Links
1 218458659 218458797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1Link to Vega Genome Browser on chromosome 1
1 218475636 218475901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1Link to Vega Genome Browser on chromosome 1
1 218478370 218478467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1Link to Vega Genome Browser on chromosome 1
1 218480773 218480974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1Link to Vega Genome Browser on chromosome 1
1 218504290 218504433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1Link to Vega Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (849 nt):
ATGGCAGCCGCCGCTCCGGACTCACGTGTGAGTGAGGAAGAAAACCTGAAAAAGACCCCAAAGAAGAAGA
TGAAAATGGTAACTGGAGCCGTAGCGTCGGTGCTGGAAGACGAGGCCACAGACACTTCTGATAGTGAAGG
AAGCTGTGGATCGGAAAAGGACCACTTTTATTCTGATGATGACGCAATAGAAGCTGACAGTGAGGGTGAT
GCTGAGCCCTGTGACAAAGAAAATGAAAATGATGGAGAATCAAGTGTTGGGACTAATATGGGCTGGGCAG
ATGCTATGGCTAAAGTCCTCAACAAGAAAACTCCTGAAAGTAAACCTACTATTCTGGTCAAAAATAAGAA
GCTGGAAAAGGAAAAAGAAAAGTTAAAGCAAGAAAGACTAGAGAAAATAAAACAGCGTGATAAGAGGCTG
GAGTGGGAAATGATGTGCAGAGTAAAGCCAGATGTTGTCCAAGACAAAGAGACAGAGAGAAATCTTCAGA
GAATTGCAACAAGGGGTGTGGTGCAATTATTTAATGCTGTTCAGAAACATCAAAAGAATGTTGATGAAAA
GGTTAAGGAAGCTGGAAGTTCTATGAGAAAGCGTGCTAAGTTGATATCAACTGTTTCCAAGAAAGATTTC
ATCAGTGTTTTGAGAGGGATGGATGGAAGTACAAATGAGACTGCTTCAAGCAGGAAGAAACCAAAAGCCA
AACAGACTGAAGTGAAATCAGAAGAAGGCCCAGGTTGGACGATCCTACGTGATGATTTCATGATGGGAGC
ATCTATGAAAGACTGGGACAAGGAAAGTGATGGGCCAGATGACAGCAGACCAGAATCTGCAAGTGACTCT
GATACATAA

Translation (282 aa):
MAAAAPDSRVSEEENLKKTPKKKMKMVTGAVASVLEDEATDTSDSEGSCGSEKDHFYSDDDAIEADSEGD
AEPCDKENENDGESSVGTNMGWADAMAKVLNKKTPESKPTILVKNKKLEKEKEKLKQERLEKIKQRDKRL
EWEMMCRVKPDVVQDKETERNLQRIATRGVVQLFNAVQKHQKNVDEKVKEAGSSMRKRAKLISTVSKKDF
ISVLRGMDGSTNETASSRKKPKAKQTEVKSEEGPGWTILRDDFMMGASMKDWDKESDGPDDSRPESASDS
DT


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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