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Report for CCDS60108.1 (previous version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
60108.1 Public Homo sapiens 1 MED8 14 105 73 CCDS HistoryNCBI Gene:112950Re-query CCDS DB by CCDS ID:60108.1Re-query CCDS DB by GeneID:112950

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Sequence IDs included in CCDS 60108.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member EBI ENST00000372455 ENSP00000361533 Accepted not alive Link to Ensembl Transcript Viewer:ENST00000372455Link to Ensembl Protein Viewer:ENSP00000361533Re-query CCDS DB by Nucleotide ID:ENST00000372455Re-query CCDS DB by Protein ID:ENSP00000361533
Original member Current member EBI OTTHUMT00000019491 OTTHUMP00000008573 Accepted alive Link to Vega Transcript Viewer:OTTHUMT00000019491Link to Vega Protein Viewer:OTTHUMP00000008573Re-query CCDS DB by Nucleotide ID:OTTHUMT00000019491Re-query CCDS DB by Protein ID:OTTHUMP00000008573
Original member NCBI NM_001001653.2 NP_001001653.1 Accepted not alive Link to Nucleotide Sequence:NM_001001653.2Link to Protein Sequence:NP_001001653.1Re-query CCDS DB by Nucleotide ID:NM_001001653Re-query CCDS DB by Protein ID:NP_001001653Link to BLAST:NP_001001653.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001001653.1 179 Q96G25-3 179 100% 0 0

Chromosomal Locations for CCDS 60108.1

Assembly GRCh37.p13 (GCF_000001405.25)

On '-' strand of Chromosome 1 (NC_000001.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1Link to Vega Genome Browser on chromosome 1

Chromosome Start Stop Links
1 43850713 43850777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1Link to Vega Genome Browser on chromosome 1
1 43851649 43851897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1Link to Vega Genome Browser on chromosome 1
1 43852260 43852341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1Link to Vega Genome Browser on chromosome 1
1 43852529 43852669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1Link to Vega Genome Browser on chromosome 1
1 43853174 43853176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1Link to Vega Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (540 nt):
ATGCGGCAGACTGAAGGACGGGTGCCTGTTTTCAGCCATGAGGTAGTCCCTGACCATCTGAGAACCAAGC
CTGACCCTGAAGTGGAAGAACAGGAGAAGCAACTGACGACAGATGCTGCCCGCATTGGTGCAGATGCAGC
CCAGAAGCAGATCCAGAGCTTGAATAAAATGTGTTCAAACCTTCTGGAGAAAATCAGCAAAGAGGAGCGA
GAATCAGAGAGTGGAGGTCTCCGGCCGAACAAGCAGACCTTTAACCCTACAGACACTAATGCCTTGGTGG
CAGCTGTTGCCTTTGGGAAAGGACTATCTAATTGGAGACCTTCAGGCAGCAGTGGTCCTGGCCAGGCAGG
CCAGCCAGGAGCTGGGACGATCCTTGCAGGAACCTCAGGATTACAGCAGGTGCAGATGGCAGGAGCTCCA
AGCCAGCAGCAGCCAATGCTCAGTGGGGTACAAATGGCTCAGGCAGGTCAACCAGGGAAAATGCCAAGTG
GAATAAAAACCAACATCAAGTCGGCTTCCATGCATCCCTACCAGCGGTGA

Translation (179 aa):
MRQTEGRVPVFSHEVVPDHLRTKPDPEVEEQEKQLTTDAARIGADAAQKQIQSLNKMCSNLLEKISKEER
ESESGGLRPNKQTFNPTDTNALVAAVAFGKGLSNWRPSGSSGPGQAGQPGAGTILAGTSGLQQVQMAGAP
SQQQPMLSGVQMAQAGQPGKMPSGIKTNIKSASMHPYQR


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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