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    THAPSDRAFT_263801 hypothetical protein [ Thalassiosira pseudonana CCMP1335 ]

    Gene ID: 7448339, updated on 21-Dec-2023

    Summary

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    Gene symbol
    THAPSDRAFT_263801
    Gene description
    hypothetical protein
    Locus tag
    THAPSDRAFT_263801
    Gene type
    protein coding
    RNA name
    hypothetical protein
    RefSeq status
    PROVISIONAL
    Organism
    Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
    Lineage
    Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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    Genomic context

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    Location:
    chromosome: 11, map: unlocalized
    Exon count:
    3

    NW_002243504.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_002243504.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
    2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables pseudouridine synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in pseudouridine synthesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Names
    hypothetical protein
    XP_002296444.1
    • Putative protein of unknown function, with similarities to pseudouridylate synthase (pseudouridine synthase) (uracil hydrolase), e.g. gi|15640904|ref|NP_230535.1| (NC_002505) pseudouridine synthase Rlu family protein [Vibrio cholerae] (model%: 58, hit%: 87, score: 243, %id: 34) [Vibrio cholerae]; putative protein of unknown function, with similarity to pseudouridylate synthase

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_002243504.1 Reference assembly

      Range
      528245..529466
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002296408.2 → XP_002296444.1  hypothetical protein THAPSDRAFT_263801 [Thalassiosira pseudonana CCMP1335]

      See identical proteins and their annotated locations for XP_002296444.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      B8LC17
      Conserved Domains (2) summary
      cd02869
      Location:91 → 273
      PseudoU_synth_RluCD_like; Pseudouridine synthase, RsuA/RluD family
      COG0564
      Location:72 → 277
      RluA; Pseudouridylate synthase, 23S rRNA- or tRNA-specific [Translation, ribosomal structure and biogenesis]
    Nucleotide Protein
    Heading Accession and Version

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