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    LOC100167850 U1 small nuclear ribonucleoprotein 70 kDa [ Acyrthosiphon pisum (pea aphid) ]

    Gene ID: 100167850, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC100167850
    Gene description
    U1 small nuclear ribonucleoprotein 70 kDa
    See related
    APHIDBASE:ACYPI008607; EnsemblRapid:LOC100167850
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Acyrthosiphon pisum
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha; Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon
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    Genomic context

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    Location:
    chromosome: A1
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    103 current pea_aphid_22Mar2018_4r6ur (GCF_005508785.1) A1 NC_042494.1 (68103111..68109777)
    102 previous assembly Acyr_2.0 (GCF_000142985.2) Unplaced Scaffold NW_003383518.1 (989443..996167)

    Chromosome A1 - NC_042494.1Genomic Context describing neighboring genes Neighboring gene sodium-dependent nutrient amino acid transporter 1 Neighboring gene proteasome subunit N3-like Neighboring gene proteasome subunit beta type-4-like Neighboring gene uncharacterized LOC107882958 Neighboring gene uncharacterized LOC103308527

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables U1 snRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of U1 snRNP IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U2-type prespliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of precatalytic spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    U1 small nuclear ribonucleoprotein 70 kDa

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Acyrthosiphon pisum Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference pea_aphid_22Mar2018_4r6ur Primary Assembly

    Genomic

    1. NC_042494.1 Reference pea_aphid_22Mar2018_4r6ur Primary Assembly

      Range
      68103111..68109777
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001952235.5 → XP_001952270.1  U1 small nuclear ribonucleoprotein 70 kDa

      UniProtKB/TrEMBL
      A0A8R1W3C8
      Related
      XP_001952270.1, XM_001952235.5
      Conserved Domains (2) summary
      cd12236
      Location:101 → 188
      RRM_snRNP70; RNA recognition motif in U1 small nuclear ribonucleoprotein 70 kDa (U1-70K) and similar proteins
      pfam12220
      Location:3 → 92
      U1snRNP70_N; U1 small nuclear ribonucleoprotein of 70kDa MW N terminal
    Nucleotide Protein
    Heading Accession and Version

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