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    CG43446 [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 12798498, updated on 10-May-2024

    Summary

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    Official Symbol
    CG43446provided by FlyBase
    Primary source
    FLYBASE:FBgn0263400
    Locus tag
    Dmel_CG43446
    See related
    AllianceGenome:FB:FBgn0263400
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    Dmel\CG43446
    Orthologs
    all
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    Genomic context

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    See CG43446 in Genome Data Viewer
    Location:
    93B3-93B3; 3-70 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (20986504..20987936, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (16812226..16813658, complement)

    Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene hadley Neighboring gene Na pump alpha subunit Neighboring gene Na/Ca-exchange protein Neighboring gene Alkaline phosphatase 5 Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Rapid Low-Cost Assembly of the Drosophila melanogaster Reference Genome Using Low-Coverage, Long-Read Sequencing. Solares EA, et al. G3 (Bethesda), 2018 Oct 3. PMID 30018084, Free PMC Article
    2. CRISPR-based modular assembly of a UAS-cDNA/ORF plasmid library for more than 5500 Drosophila genes conserved in humans. Wei P, et al. Genome Res, 2020 Jan. PMID 31722958, Free PMC Article
    3. Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species. Sanfilippo P, et al. Genome Biol, 2017 Nov 30. PMID 29191225, Free PMC Article
    4. Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster. Liu X, et al. RNA, 2017 Dec. PMID 28851752, Free PMC Article
    5. The Release 6 reference sequence of the Drosophila melanogaster genome. Hoskins RA, et al. Genome Res, 2015 Mar. PMID 25589440, Free PMC Article

    See all (16) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG43446-PA
    CG43446-PB

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033777.3 Reference assembly

      Range
      20986504..20987936 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001260287.1 → NP_001247216.1  uncharacterized protein Dmel_CG43446, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001247216.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      D4G7E9
      Conserved Domains (1) summary
      cl22851
      Location:3 → 58
      PHD_SF; PHD finger superfamily

    2. NM_001260288.1 → NP_001247217.1  uncharacterized protein Dmel_CG43446, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001247217.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A0B4K6S5
      Conserved Domains (1) summary
      cl22851
      Location:3 → 58
      PHD_SF; PHD finger superfamily
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A0A0B4K6S5 A0A0B4K6S5
    D4G7E9 D4G7E9

    Gene LinkOut

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    Other Literature Sources
    Molecular Biology Databases
    Research Materials