|
| Status |
Public on Nov 01, 2011 |
| Title |
KH009 |
| Sample type |
RNA |
| |
|
| Source name |
frozen tissue of primary lung tumors
|
| Organism |
Homo sapiens |
| Characteristics |
tissue: primary lung tumor
age (years): 64
gender: male
smoking status: Ever-smoker
bi: 320
pathological stage: II
pstage iorii: II
gene alteration status: EGFR mutation +
myc: Low
myc_copy: 0.791
relapse: relapsed
days before relapse/censor: 1725
months before relapse/censor: 57.5
death: alive
days before death/censor: 2668
months before relapse/censor: 88.9333333333333
exclude for prognosis analysis due to incomplete resection or adjuvant therapy: none
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Trizol extraction according to the manufacturer's instructions.
|
| Label |
Biotin
|
| Label protocol |
100ng of total RNA was labeled using a Two-Cycle Target Labeling and Control Reagents.
|
| |
|
| Hybridization protocol |
Following fragmentation, cRNA was hybridized on the GeneChip Human U133 Plus 2.0 array according to the Affymetrix standard protcol.
|
| Scan protocol |
GeneChips were scanned using the Affymetrix GeneArray scanner 3000.
|
| Description |
Gene expression data from primary lung ADC
|
| Data processing |
The data were normalized by the MAS5 algorhythm.
|
| |
|
| Submission date |
Aug 04, 2011 |
| Last update date |
Nov 02, 2011 |
| Contact name |
Takashi Kohno |
| E-mail(s) |
tkkohno@ncc.go.jp
|
| Organization name |
National Cancer Center Research Institute
|
| Street address |
5-1-1 Tsukiji
|
| City |
Chuo-ku |
| ZIP/Postal code |
104-0045 |
| Country |
Japan |
| |
|
| Platform ID |
GPL570 |
| Series (1) |
| GSE31210 |
Gene expression data for pathological stage I-II lung adenocarcinomas |
|
