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Sample GSM720354

Query DataSets for GSM720354

Status

Public on May 07, 2011

Title

Myers_HEK293_2_None_Stanford

Sample type

SRA

Source name

HEK293

Organism

Homo sapiens

Characteristics

cell: HEK293
cell organism: Human
cell description: embryonic kidney
cell karyotype: cancer
cell lineage: endoderm
cell sex: U
replicate: 2
treatment: None
obtainedby: Stanford

Biomaterial provider

ATCC

Growth protocol

Cells were grown according to ENCODE cell culture protocols: http://genome.ucsc.edu/ENCODE/protocols/cells/human/UW_Stam:Stam_15_protocols.pdf

Extracted molecule

genomic DNA

Extraction protocol

For extraction protocol details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibMethylRrbs

Library strategy

Bisulfite-Seq

Library source

genomic

Library selection

Reduced Representation

Instrument model

Illumina Genome Analyzer IIx

Data processing

For data processing details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibMethylRrbs

Submission date

May 04, 2011

Last update date

May 15, 2019

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platform ID

GPL10999

Series (1)

GSE27584

DNA Methylation by Reduced Representation Bisulfite Seq from ENCODE/HudsonAlpha

Relations

SRA

SRX061861

BioSample

SAMN00264797

Supplementary file	Size	Download	File type/resource
GSM720354_hg19_wgEncodeHaibMethylRrbsHek293StanfordSitesRep2.bedRrbs.gz	14.8 Mb	(ftp)(http)	BEDRRBS
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file