NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM637539 Query DataSets for GSM637539
Status Public on Feb 21, 2012
Title Muscle_Old_Men_25.0
Sample type RNA
 
Source name Vastus lateralis muscle
Organism Homo sapiens
Characteristics tissue: Vastus lateralis muscle
age: Old
gender: Male
Extracted molecule total RNA
Extraction protocol Homogenize the muscle tissue in TRI reagent and extracted RNA according to manufacturer's protocol, and then purified using Rneasy Micro Kit (Qiagen).
Label biotin
Label protocol 40ng of total RNA was labeled using NuGen WT-Ovation RNA Amp v2 kit and protocol
 
Hybridization protocol Affymetrix Fluidics Station 400
Scan protocol Affymetrix GeneChip Scanner 3000 7G
Description GPL750
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1500.
 
Submission date Dec 08, 2010
Last update date Feb 21, 2012
Contact name Shawn T. Estrem
Organization name Eli Lilly and Company
Street address Lilly Corporate Center
City Indianapolis
ZIP/Postal code 46285
Country USA
 
Platform ID GPL570
Series (1)
GSE25941 Effects of age on the skeletal muscle transcriptome

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 5162.75 P 4.42873e-05
AFFX-BioB-M_at 9861.46 P 4.42873e-05
AFFX-BioB-3_at 7888.46 P 4.42873e-05
AFFX-BioC-5_at 16369 P 4.42873e-05
AFFX-BioC-3_at 11045.2 P 4.42873e-05
AFFX-BioDn-5_at 31079.7 P 4.42873e-05
AFFX-BioDn-3_at 49458 P 4.42873e-05
AFFX-CreX-5_at 91292.8 P 5.16732e-05
AFFX-CreX-3_at 88603.3 P 4.42873e-05
AFFX-DapX-5_at 59.8909 A 0.139482
AFFX-DapX-M_at 7.73715 A 0.979978
AFFX-DapX-3_at 16.6166 A 0.9273
AFFX-LysX-5_at 3.65196 A 0.84329
AFFX-LysX-M_at 42.8733 A 0.300606
AFFX-LysX-3_at 41.8242 A 0.440641
AFFX-PheX-5_at 23.8852 A 0.52976
AFFX-PheX-M_at 3.31756 A 0.891021
AFFX-PheX-3_at 45.9211 A 0.470241
AFFX-ThrX-5_at 49.1036 A 0.544591
AFFX-ThrX-M_at 11.4254 A 0.737173

Total number of rows: 54675

Table truncated, full table size 1657 Kbytes.




Supplementary file Size Download File type/resource
GSM637539.CEL.gz 5.2 Mb (ftp)(http) CEL
GSM637539.CHP.gz 291.2 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap