|
| Status |
Public on Sep 24, 2020 |
| Title |
AG663510-4 |
| Sample type |
SRA |
| |
|
| Source name |
Melanoma
|
| Organism |
Homo sapiens |
| Characteristics |
sample type: Tumor Biopsy
individual: 2000116102
cohort: SCREEN FAIL
visit: SCREENING
site description: METASTATIC SITE
site: LYMPH NODE
treatment: durva.mek
braf mutation: Braf.wt
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Qiagen
Takara Bio SMART-Seq: SMART-Seq v4 Ultra Low Input RNA Kit
RNA sequening was performed on Illumina HiSeq 2500 with 2x75 bp reads.
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 2500 |
| |
|
| Description |
polyA RNA
|
| Data processing |
RNAseq reads were aligned using HISAT2 to the human reference genome GRCh38.
FPKM values were generated using Stringtie.
Genome_build: GRCh38
Supplementary_files_format_and_content: tab-delimited text file includes FPKM values for each sample
|
| |
|
| Submission date |
Sep 23, 2020 |
| Last update date |
Sep 24, 2020 |
| Contact name |
Antoni Ribas |
| E-mail(s) |
aribas@mednet.ucla.edu
|
| Phone |
(310) 206-3928
|
| Organization name |
University of California, Los Angeles
|
| Department |
Medicine, HemOnc Division
|
| Street address |
9-954 Factor Bldg
|
| City |
Los Angeles |
| State/province |
CA |
| ZIP/Postal code |
90095-1678 |
| Country |
USA |
| |
|
| Platform ID |
GPL16791 |
| Series (1) |
| GSE158403 |
PD-L1 blockade in combination with inhibition of MAPK oncogenic signaling in patients with advanced melanoma |
|
| Relations |
| BioSample |
SAMN16244649 |
| SRA |
SRX9176468 |
