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Sample GSM455133 Query DataSets for GSM455133
Status Public on Oct 09, 2009
Title Hi-C (HindIII,GM,1)
Sample type SRA
 
Source name GM06990
Organism Homo sapiens
Characteristics cell line: GM06990
restriction enzyme: HindIII
biological sample #: 1
pcr # from biological sample: 1
lane: 1
read end: 1,2
Biomaterial provider Coriell Cell Repositories http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM06990
Growth protocol Human cell line GM06990, an EBV-transformed lymphoblastoid cell line (Coriell, Camden, NJ), was cultured in RPMI1640, 15% fetal calf serum, 1% penicillin-streptomycin, and 2mM L-glutamine. Human erythroleukemia cell line K562 (ATCC, Manassas, VA) was cultured in DMEM, 10% fetal calf serum, 1% penicillinstreptomycin, and 2mM L-glutamine.
Extracted molecule genomic DNA
Extraction protocol Hi-C approach as described in the paper
 
Library strategy OTHER
Library source genomic
Library selection other
Instrument model Illumina Genome Analyzer
 
Description contains both read ends
Data processing Independent alignment of both ends of each read using Maq (http://maq.sourceforge.net/)
 
Submission date Sep 21, 2009
Last update date May 23, 2013
Contact name Erez Lieberman-Aiden
E-mail erezl@princeton.edu
Organization name Harvard/MIT/Broad
Street address 7 Cambridge Circle
City Cambridge
State/province MA
ZIP/Postal code 02139
Country USA
 
Platform ID GPL9052
Series (1)
GSE18199 Comprehensive mapping of long-range interactions reveals folding principles of the human genome.
Relations
SRA SRX011608
BioSample SAMN00003923

Supplementary file Size Download File type/resource
GSM455133_30E0LAAXX.1.maq.hic.summary.binned.txt.gz 76.3 Mb (ftp)(http) TXT
Processed data provided as supplementary file
Raw data provided as supplementary file
Processed data is available on Series record

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