 |
 |
GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Oct 09, 2009 |
| Title |
Hi-C (HindIII,GM,1) |
| Sample type |
SRA |
| |
|
| Source name |
GM06990
|
| Organism |
Homo sapiens |
| Characteristics |
cell line: GM06990
restriction enzyme: HindIII
biological sample #: 1
pcr # from biological sample: 1
lane: 1
read end: 1,2
|
| Biomaterial provider |
Coriell Cell Repositories http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM06990
|
| Growth protocol |
Human cell line GM06990, an EBV-transformed lymphoblastoid cell line (Coriell, Camden, NJ), was cultured in RPMI1640, 15% fetal calf serum, 1% penicillin-streptomycin, and 2mM L-glutamine. Human erythroleukemia cell line K562 (ATCC, Manassas, VA) was cultured in DMEM, 10% fetal calf serum, 1% penicillinstreptomycin, and 2mM L-glutamine.
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Hi-C approach as described in the paper
|
| |
|
| Library strategy |
OTHER |
| Library source |
genomic |
| Library selection |
other |
| Instrument model |
Illumina Genome Analyzer |
| |
|
| Description |
contains both read ends
|
| Data processing |
Independent alignment of both ends of each read using Maq (http://maq.sourceforge.net/)
|
| |
|
| Submission date |
Sep 21, 2009 |
| Last update date |
May 15, 2019 |
| Contact name |
Erez Lieberman-Aiden |
| E-mail(s) |
erezl@princeton.edu
|
| Organization name |
Harvard/MIT/Broad
|
| Street address |
7 Cambridge Circle
|
| City |
Cambridge |
| State/province |
MA |
| ZIP/Postal code |
02139 |
| Country |
USA |
| |
|
| Platform ID |
GPL9052 |
| Series (1) |
| GSE18199 |
Comprehensive mapping of long-range interactions reveals folding principles of the human genome. |
|
| Relations |
| SRA |
SRX011608 |
| BioSample |
SAMN00003923 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM455133_30E0LAAXX.1.maq.hic.summary.binned.txt.gz |
76.3 Mb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Processed data provided as supplementary file |
| Raw data are available in SRA |
| Processed data are available on Series record |
|
|
|
|
 |
