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Sample GSM41938 Query DataSets for GSM41938
Status Public on Feb 10, 2006
Title WT_4h:Blank_4h - mAdb ID 54149
Sample type RNA
 
Channel 1
Source name Blank_4h
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name WT_4h
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description mAdb experiment ID: 54149
Flp-In TREx 293 cells stably transfected with wild type-Vpr versus Flp-In TREx 293 cells stably transfected with blank vector harvested after 4 hrs of doxycycline treatment
Array Print: Hs-OperonV2-vB1.2p26-012004
cell_type: human embryonic kidney
cell_line: 293
Doxycycline treatment: 1 microgram/ml
treatment_time (hrs): 4
SAMPLE: WT_4h:Blank_4h
 
Submission date Feb 10, 2005
Last update date Apr 03, 2006
Contact name Naoto Yoshizuka
E-mail(s) yoshizun@mail.nih.gov
Phone 301-402-3624
Organization name NCI
Street address
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL1528
Series (1)
GSE2296 Effects of inducible HIV-1 Vpr protein on cellular gene expression

Data table header descriptions
ID_REF NCI mAdb well id plus replicate number
VALUE same as UNF_VALUE but with flagged values removed
PRE_VALUE Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median Sample 1 (Red Channel) median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) mean Intensity
CH2_SD Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median Sample 2 (Green Channel) median Background Level
CH2_BKD_SD Sample 2 (Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
UNF_VALUE log ratio (log2 of PRE_VALUE)

Data table
ID_REF VALUE PRE_VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_median CH2_BKD_SD Flag UNF_VALUE
1173588_1 -0.592 0.663 1 1 1 1371 503 155 109 2052 545 200 61 0 -0.592
1174364_1 -0.427 0.744 1 1 2 3662 1007 154 109 4971 1025 206 68 0 -0.427
1175152_1 -0.035 0.976 1 1 3 1010 394 160 108 1086 335 206 68 0 -0.035
1175940_1 -0.397 0.759 1 1 4 803 274 158 93 1060 255 202 68 0 -0.397
1176716_1 0.049 1.035 1 1 5 6602 2705 164 110 6480 2596 195 70 0 0.049
1177504_1 0.252 1.191 1 1 6 1763 513 164 132 1550 321 194 66 0 0.252
1178580_1 0.027 1.019 1 1 7 7262 2878 164 111 7238 2376 203 60 0 0.027
1179356_1 -0.262 0.834 1 1 8 456 235 158 96 566 240 205 62 0 -0.262
1180144_1 0.472 1.387 1 1 9 3800 1837 155 94 2851 1198 196 63 0 0.472
1180932_1 -0.837 0.560 1 1 10 525 228 156 102 854 279 188 64 0 -0.837
1181708_1 0.046 1.032 1 1 11 859 405 155 115 889 307 200 62 0 0.046
1182496_1 -1.133 0.456 1 1 12 300 154 151 164 527 258 197 67 0 -1.133
1183572_1 0.084 1.060 1 1 13 2124 645 156 179 2065 505 190 95 0 0.084
1184348_1 0.402 1.321 1 1 14 807 441 157 112 693 238 196 77 0 0.402
1185136_1 0.716 1.643 1 1 15 363 367 176 97 313 186 198 80 0 0.716
1185924_1 -0.115 0.924 1 1 16 593 308 166 99 662 287 195 85 0 -0.115
1186700_1 -0.110 0.926 1 1 17 1573 784 156 1507 1737 786 192 169 0 -0.110
1187488_1 -0.517 0.699 1 1 18 681 301 154 149 956 277 194 67 0 -0.517
1188564_1 0.504 1.419 1 1 19 5500 1891 168 110 3993 1295 196 74 0 0.504
1189340_1 -0.336 0.792 1 1 20 2004 666 166 142 2536 821 193 76 0 -0.336

Total number of rows: 21794

Table truncated, full table size 1523 Kbytes.




Supplementary data files not provided
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