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GEO accession:
Sample GSM2534461
Query DataSets for GSM2534461
Status
Public on Mar 12, 2017
Title
ChIP-seq from neuroepithelial stem cell (ENCLB843KFD)
Sample type
SRA
Source name
Homo sapiens neuroepithelial stem in vitro differentiated cells female embryo (5 days) derived from H9 stably expressing C-terminal eGFP-HES5 fusion protein
Organism
Homo sapiens
Characteristics
antibody: Control
cell_type: neuroepithelial stem cell
biomaterial_type: in vitro differentiated cells
description: Neuroepithelial cells were collected at day 12 of differentiation (see protocol)
biosample encode accession: ENCBS435FHS (SAMN06464408)
dev stage: embryonic
Sex: female
donor_id: ENCDO222AAA
age: 5 day
health state: healthy
passage number: 0
lab: Bradley Bernstein, Broad
link: ENCBS435FHS at ENCODE;
https://www.encodeproject.org/ENCBS435FHS/
link: Derived from ENCODE donor ENCDO222AAA;
https://www.encodeproject.org/ENCDO222AAA/
link: general protocol;
https://www.encodeproject.org/documents/993dbbe1-11ab-4991-9555-da0c8ef8a69f/@@download/attachment/H9deriveddifferentiationprotocol.pdf
Extracted molecule
genomic DNA
Extraction protocol
general protocol:
https://www.encodeproject.org/documents/69af4be8-3a50-4819-9642-ffb6db747469/@@download/attachment/whole_cell_extract_library_construction_v1.0.pdf
Library strategy
ChIP-Seq
Library source
genomic
Library selection
ChIP
Instrument model
Illumina HiSeq 2500
Description
https://www.encodeproject.org/experiments/ENCSR803UDX/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR803UDX
assay title: ChIP-seq
encode release date: 2015-08-03
lab: Bradley Bernstein, Broad
library encode accession: ENCLB843KFD
size range: 200-600
Data processing
See GSM*_README.txt supplementary file linked below
Submission date
Mar 12, 2017
Last update date
May 15, 2019
Contact name
ENCODE DCC
E-mail(s)
encode-help@lists.stanford.edu
Organization name
ENCODE DCC
Street address
300 Pasteur Dr
City
Stanford
State/province
CA
ZIP/Postal code
94305-5120
Country
USA
Platform ID
GPL16791
Series (1)
GSE96387
ChIP-seq from neuroepithelial stem cell (ENCSR803UDX)
Relations
BioSample
SAMN06464408
SRA
SRX2636368
Supplementary file
Size
Download
File type/resource
GSM2534461_ENCLB843KFD_README.txt.gz
382 b
(ftp)
(http)
TXT
SRA Run Selector
Raw data are available in SRA
Processed data are available on Series record
Processed data provided as supplementary file
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