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Sample GSM2534350

Query DataSets for GSM2534350

Status

Public on Mar 12, 2017

Title

ChIP-seq from A673 (ENCLB823XKP)

Sample type

SRA

Source name

Homo sapiens A673 immortalized cell line

Organism

Homo sapiens

Characteristics

antibody: H3K27ac
line: A673
biomaterial_type: immortalized cell line
description: Cell line is A673; this is a purchasable public domain cell type per Miguel Rivera, M.D.
biosample encode accession: ENCBS615MBV (SAMN06464460)
dev stage: unknown
Sex: female
age: 15 year
lab: Bradley Bernstein, Broad
link: ENCBS615MBV at ENCODE; https://www.encodeproject.org/ENCBS615MBV/
link: Derived from ENCODE donor ENCDO027VXA; https://www.encodeproject.org/ENCDO027VXA/
link: ENCODE dbxrefs Cellosaurus CVCL_0080; http://web.expasy.org/cellosaurus/CVCL_0080

Extracted molecule

genomic DNA

Extraction protocol

general protocol: https://www.encodeproject.org/documents/be2a0f12-af38-430c-8f2d-57953baab5f5/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v1.1_exp.pdf

Library strategy

ChIP-Seq

Library source

genomic

Library selection

ChIP

Instrument model

Illumina HiSeq 2500

Description

https://www.encodeproject.org/experiments/ENCSR714TJD/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR714TJD
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR196CXJ
encode release date: 2016-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB823XKP
size range: 200-600

Data processing

See GSM*_README.txt supplementary file linked below

Submission date

Mar 12, 2017

Last update date

May 15, 2019

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platform ID

GPL16791

Series (1)

GSE96332

ChIP-seq from A673 (ENCSR714TJD)

Relations

BioSample

SAMN06464460

SRA

SRX2636198

Supplementary file	Size	Download	File type/resource
GSM2534350_ENCFF193KUK_signal_p-value_GRCh38.bigWig	1.1 Gb	(ftp)(http)	BIGWIG
GSM2534350_ENCFF266PZK_peaks_GRCh38.bigBed	4.1 Mb	(ftp)(http)	BIGBED
GSM2534350_ENCFF283XOP_peaks_hg19.bed.gz	1.5 Mb	(ftp)(http)	BED
GSM2534350_ENCFF544YYB_peaks_hg19.bigBed	4.1 Mb	(ftp)(http)	BIGBED
GSM2534350_ENCFF579ICS_fold_change_over_control_GRCh38.bigWig	785.5 Mb	(ftp)(http)	BIGWIG
GSM2534350_ENCFF635ZIL_peaks_GRCh38.bed.gz	1.5 Mb	(ftp)(http)	BED
GSM2534350_ENCFF789AFY_signal_p-value_hg19.bigWig	948.7 Mb	(ftp)(http)	BIGWIG
GSM2534350_ENCFF852NUJ_fold_change_over_control_hg19.bigWig	787.9 Mb	(ftp)(http)	BIGWIG
GSM2534350_ENCLB823XKP_README.txt.gz	1.7 Kb	(ftp)(http)	TXT
SRA Run Selector
Raw data are available in SRA
Processed data are available on Series record
Processed data provided as supplementary file