GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM2400232 Query DataSets for GSM2400232
Status Public on Dec 07, 2016
Title polyA mRNA RNA-seq from B cell (ENCLB555APR)
Sample type SRA
Source name Homo sapiens B primary cell female adult (43 years)
Organism Homo sapiens
Characteristics cell_type: B cell
biomaterial_type: primary cell
description: CD20+ B cells, caucasian, draw number 1
biosample encode accession: ENCBS483ENC (SAMN06044617)
dev stage: adult
Sex: female
donor_id: ENCDO114AAA
age: 43 year
health state: normal
passage number: 2
lab: John Stamatoyannopoulos, UW
link: ENCBS483ENC at ENCODE;
link: Derived from ENCODE donor ENCDO114AAA;
link: cell isolation protocol;
link: ENCODE dbxrefs CD20+_RO01778;
link: ENCODE dbxrefs CD20+;
link: Sample source;
Extracted molecule total RNA
Extraction protocol extraction method: see document
general protocol:
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina Genome Analyzer IIx
biological replicate number: 2
technical replicate number: 1
description: The libraries contained in this experiment come from the whole cell fraction of independent isolates of CD20+ B cells. They are stranded PE76 Illumina GAIIx RNA-Seq libraries from rRNA-depleted Poly-A+ RNA > 200 nucleotides in size.
experiment encode accession: ENCSR000CTV
assay title: polyA mRNA RNA-seq
assembly: GRCh38, hg19
encode release date: 2012-06-21
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB555APR
size range: >200
spikeins used: /references/ENCSR402QNO/
Data processing See GSM*_README.txt supplementary file linked below
Submission date Nov 22, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL10999
Series (1)
GSE90268 polyA mRNA RNA-seq from B cell (ENCSR000CTV)
BioSample SAMN06044617
SRA SRX2370548
Named Annotation GSM2400232_ENCFF302QNI_plus_strand_signal_of_unique_reads_GRCh38.bigWig
Named Annotation GSM2400232_ENCFF903XZF_plus_strand_signal_of_all_reads_GRCh38.bigWig
Named Annotation GSM2400232_ENCFF844YRB_minus_strand_signal_of_unique_reads_GRCh38.bigWig
Named Annotation GSM2400232_ENCFF819VCB_minus_strand_signal_of_all_reads_GRCh38.bigWig

Supplementary file Size Download File type/resource
GSM2400232_ENCFF111CWV_minus_strand_signal_of_unique_reads_hg19.bigWig 137.3 Mb (ftp)(http) BIGWIG
GSM2400232_ENCFF230HGP_minus_strand_signal_of_all_reads_hg19.bigWig 151.1 Mb (ftp)(http) BIGWIG
GSM2400232_ENCFF231GYC_gene_quantifications_GRCh38.tsv.gz 2.6 Mb (ftp)(http) TSV
GSM2400232_ENCFF302QNI_plus_strand_signal_of_unique_reads_GRCh38.bigWig 143.0 Mb (ftp)(http) BIGWIG
GSM2400232_ENCFF308ZJB_plus_strand_signal_of_all_reads_hg19.bigWig 155.3 Mb (ftp)(http) BIGWIG
GSM2400232_ENCFF410IPV_transcript_quantifications_hg19.tsv.gz 7.7 Mb (ftp)(http) TSV
GSM2400232_ENCFF422SXS_gene_quantifications_hg19.tsv.gz 2.5 Mb (ftp)(http) TSV
GSM2400232_ENCFF541AEO_transcript_quantifications_GRCh38.tsv.gz 7.8 Mb (ftp)(http) TSV
GSM2400232_ENCFF819VCB_minus_strand_signal_of_all_reads_GRCh38.bigWig 152.5 Mb (ftp)(http) BIGWIG
GSM2400232_ENCFF844YRB_minus_strand_signal_of_unique_reads_GRCh38.bigWig 138.1 Mb (ftp)(http) BIGWIG
GSM2400232_ENCFF903XZF_plus_strand_signal_of_all_reads_GRCh38.bigWig 156.9 Mb (ftp)(http) BIGWIG
GSM2400232_ENCFF955JCA_plus_strand_signal_of_unique_reads_hg19.bigWig 142.4 Mb (ftp)(http) BIGWIG
GSM2400232_ENCLB555APR_README.txt.gz 1.8 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data is available on Series record
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap