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Sample GSM2344268 Query DataSets for GSM2344268
Status Public on Nov 08, 2016
Title total RNA-seq from suprapubic skin (ENCLB591IEN)
Sample type SRA
Source name Homo sapiens suprapubic skin tissue male adult (37 years)
Organism Homo sapiens
Characteristics tissue_type: suprapubic skin
biomaterial_type: tissue
description: Suprapubic skin (not sun exposed) aliquot received by the Gingeras lab to conduct RNA-Seq assays on.
biosample encode accession: ENCBS218MJW (SAMN05896991)
age: 37 year
dev stage: adult
donor_id: ENCDO845WKR
Sex: male
lab: Thomas Gingeras, CSHL
link: ENCBS218MJW at ENCODE;
link: Derived from ENCODE donor ENCDO845WKR;
Extracted molecule total RNA
Extraction protocol extraction method: see document
general protocol:
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 2500
biological replicate number: 1
technical replicate number: 1
description: The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's suprapubic skin tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
experiment encode accession: ENCSR862RGX
assay title: total RNA-seq
assembly: hg19, GRCh38
encode release date: 2016-05-03
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB591IEN
size range: >200
spikeins used: /references/ENCSR156CIL/
Data processing See GSM*_README.txt supplementary file linked below
Submission date Oct 13, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL16791
Series (1)
GSE88605 total RNA-seq from suprapubic skin (ENCSR862RGX)
BioSample SAMN05896991
SRA SRX2244675
Named Annotation GSM2344268_ENCFF434XRK_minus_strand_signal_of_all_reads_GRCh38.bigWig
Named Annotation GSM2344268_ENCFF689FMZ_plus_strand_signal_of_all_reads_GRCh38.bigWig
Named Annotation GSM2344268_ENCFF910KNA_minus_strand_signal_of_unique_reads_GRCh38.bigWig
Named Annotation GSM2344268_ENCFF596MHD_plus_strand_signal_of_unique_reads_GRCh38.bigWig

Supplementary file Size Download File type/resource
GSM2344268_ENCFF007DUG_transcript_quantifications_GRCh38.tsv.gz 7.8 Mb (ftp)(http) TSV
GSM2344268_ENCFF029OTD_minus_strand_signal_of_unique_reads_hg19.bigWig 113.8 Mb (ftp)(http) BIGWIG
GSM2344268_ENCFF132TMQ_gene_quantifications_hg19.tsv.gz 2.5 Mb (ftp)(http) TSV
GSM2344268_ENCFF161BRR_transcript_quantifications_hg19.tsv.gz 7.7 Mb (ftp)(http) TSV
GSM2344268_ENCFF201IZF_minus_strand_signal_of_all_reads_hg19.bigWig 121.8 Mb (ftp)(http) BIGWIG
GSM2344268_ENCFF341IAQ_gene_quantifications_GRCh38.tsv.gz 2.6 Mb (ftp)(http) TSV
GSM2344268_ENCFF434XRK_minus_strand_signal_of_all_reads_GRCh38.bigWig 122.0 Mb (ftp)(http) BIGWIG
GSM2344268_ENCFF596MHD_plus_strand_signal_of_unique_reads_GRCh38.bigWig 115.6 Mb (ftp)(http) BIGWIG
GSM2344268_ENCFF628ASX_plus_strand_signal_of_all_reads_hg19.bigWig 123.5 Mb (ftp)(http) BIGWIG
GSM2344268_ENCFF689FMZ_plus_strand_signal_of_all_reads_GRCh38.bigWig 125.7 Mb (ftp)(http) BIGWIG
GSM2344268_ENCFF910KNA_minus_strand_signal_of_unique_reads_GRCh38.bigWig 112.8 Mb (ftp)(http) BIGWIG
GSM2344268_ENCFF951EDP_plus_strand_signal_of_unique_reads_hg19.bigWig 116.6 Mb (ftp)(http) BIGWIG
GSM2344268_ENCLB591IEN_README.txt.gz 1.2 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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