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Sample GSM2344268

Query DataSets for GSM2344268

Status

Public on Nov 08, 2016

Title

total RNA-seq from suprapubic skin (ENCLB591IEN)

Sample type

SRA

Source name

Homo sapiens suprapubic skin tissue male adult (37 years)

Organism

Homo sapiens

Characteristics

tissue_type: suprapubic skin
biomaterial_type: tissue
description: Suprapubic skin (not sun exposed) aliquot received by the Gingeras lab to conduct RNA-Seq assays on.
biosample encode accession: ENCBS218MJW (SAMN05896991)
age: 37 year
dev stage: adult
donor_id: ENCDO845WKR
Sex: male
lab: Thomas Gingeras, CSHL
link: ENCBS218MJW at ENCODE; https://www.encodeproject.org/ENCBS218MJW/
link: Derived from ENCODE donor ENCDO845WKR; https://www.encodeproject.org/ENCDO845WKR/

Extracted molecule

total RNA

Extraction protocol

extraction method: see document
general protocol: https://www.encodeproject.org/documents/159cdaf8-a8c3-45aa-8f9e-62eadb824c6c/@@download/attachment/296374.pdf

Library strategy

RNA-Seq

Library source

transcriptomic

Library selection

cDNA

Instrument model

Illumina HiSeq 2500

Description

https://www.encodeproject.org/experiments/ENCSR862RGX/
***************
biological replicate number: 1
technical replicate number: 1
description: The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's suprapubic skin tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
experiment encode accession: ENCSR862RGX
assay title: total RNA-seq
assembly: hg19, GRCh38
encode release date: 2016-05-03
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB591IEN
size range: >200
spikeins used: /references/ENCSR156CIL/

Data processing

See GSM*_README.txt supplementary file linked below

Submission date

Oct 13, 2016

Last update date

May 15, 2019

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platform ID

GPL16791

Series (1)

GSE88605

total RNA-seq from suprapubic skin (ENCSR862RGX)

Relations

BioSample

SAMN05896991

SRA

SRX2244675

Named Annotation

GSM2344268_ENCFF434XRK_minus_strand_signal_of_all_reads_GRCh38.bigWig

Named Annotation

GSM2344268_ENCFF689FMZ_plus_strand_signal_of_all_reads_GRCh38.bigWig

Named Annotation

GSM2344268_ENCFF910KNA_minus_strand_signal_of_unique_reads_GRCh38.bigWig

Named Annotation

GSM2344268_ENCFF596MHD_plus_strand_signal_of_unique_reads_GRCh38.bigWig

Supplementary file	Size	Download	File type/resource
GSM2344268_ENCFF007DUG_transcript_quantifications_GRCh38.tsv.gz	7.8 Mb	(ftp)(http)	TSV
GSM2344268_ENCFF029OTD_minus_strand_signal_of_unique_reads_hg19.bigWig	113.8 Mb	(ftp)(http)	BIGWIG
GSM2344268_ENCFF132TMQ_gene_quantifications_hg19.tsv.gz	2.5 Mb	(ftp)(http)	TSV
GSM2344268_ENCFF161BRR_transcript_quantifications_hg19.tsv.gz	7.7 Mb	(ftp)(http)	TSV
GSM2344268_ENCFF201IZF_minus_strand_signal_of_all_reads_hg19.bigWig	121.8 Mb	(ftp)(http)	BIGWIG
GSM2344268_ENCFF341IAQ_gene_quantifications_GRCh38.tsv.gz	2.6 Mb	(ftp)(http)	TSV
GSM2344268_ENCFF434XRK_minus_strand_signal_of_all_reads_GRCh38.bigWig	122.0 Mb	(ftp)(http)	BIGWIG
GSM2344268_ENCFF596MHD_plus_strand_signal_of_unique_reads_GRCh38.bigWig	115.6 Mb	(ftp)(http)	BIGWIG
GSM2344268_ENCFF628ASX_plus_strand_signal_of_all_reads_hg19.bigWig	123.5 Mb	(ftp)(http)	BIGWIG
GSM2344268_ENCFF689FMZ_plus_strand_signal_of_all_reads_GRCh38.bigWig	125.7 Mb	(ftp)(http)	BIGWIG
GSM2344268_ENCFF910KNA_minus_strand_signal_of_unique_reads_GRCh38.bigWig	112.8 Mb	(ftp)(http)	BIGWIG
GSM2344268_ENCFF951EDP_plus_strand_signal_of_unique_reads_hg19.bigWig	116.6 Mb	(ftp)(http)	BIGWIG
GSM2344268_ENCLB591IEN_README.txt.gz	1.2 Kb	(ftp)(http)	TXT
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file