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Sample GSM2344259 Query DataSets for GSM2344259
Status Public on Nov 08, 2016
Title total RNA-seq from tibial nerve (ENCLB464VVH)
Sample type SRA
 
Source name Homo sapiens tibial nerve tissue female adult (53 years)
Organism Homo sapiens
Characteristics tissue_type: tibial nerve
biomaterial_type: tissue
description: Tibial nerve tissue from received by the Gingeras lab to do RNA-Seq assay on from GTEx.
biosample encode accession: ENCBS358ZMI (SAMN05897120)
age: 53 year
dev stage: adult
donor_id: ENCDO793LXB
Sex: female
lab: Thomas Gingeras, CSHL
link: ENCBS358ZMI at ENCODE; https://www.encodeproject.org/ENCBS358ZMI/
link: Derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/
Extracted molecule total RNA
Extraction protocol extraction method: see document
general protocol: https://www.encodeproject.org/documents/1f044ca3-ec8a-486c-b6af-5c6e79d7b742/@@download/attachment/296340.pdf
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 2500
 
Description https://www.encodeproject.org/experiments/ENCSR858QEL/
***************
biological replicate number: 1
technical replicate number: 1
description: The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's tibial nerve tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
experiment encode accession: ENCSR858QEL
assay title: total RNA-seq
assembly: hg19, GRCh38
encode release date: 2016-02-18
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB464VVH
size range: >200
spikeins used: /references/ENCSR156CIL/
Data processing See GSM*_README.txt supplementary file linked below
 
Submission date Oct 13, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL16791
Series (1)
GSE88600 total RNA-seq from tibial nerve (ENCSR858QEL)
Relations
BioSample SAMN05897120
SRA SRX2244658
Named Annotation GSM2344259_ENCFF278PIM_plus_strand_signal_of_unique_reads_GRCh38.bigWig
Named Annotation GSM2344259_ENCFF390ZIX_minus_strand_signal_of_all_reads_GRCh38.bigWig
Named Annotation GSM2344259_ENCFF428KEE_plus_strand_signal_of_all_reads_GRCh38.bigWig
Named Annotation GSM2344259_ENCFF252AEW_minus_strand_signal_of_unique_reads_GRCh38.bigWig

Supplementary file Size Download File type/resource
GSM2344259_ENCFF046AFQ_gene_quantifications_GRCh38.tsv.gz 2.6 Mb (ftp)(http) TSV
GSM2344259_ENCFF252AEW_minus_strand_signal_of_unique_reads_GRCh38.bigWig 80.9 Mb (ftp)(http) BIGWIG
GSM2344259_ENCFF277KZX_minus_strand_signal_of_unique_reads_hg19.bigWig 80.7 Mb (ftp)(http) BIGWIG
GSM2344259_ENCFF278PIM_plus_strand_signal_of_unique_reads_GRCh38.bigWig 83.0 Mb (ftp)(http) BIGWIG
GSM2344259_ENCFF353BYQ_transcript_quantifications_GRCh38.tsv.gz 7.7 Mb (ftp)(http) TSV
GSM2344259_ENCFF390ZIX_minus_strand_signal_of_all_reads_GRCh38.bigWig 87.0 Mb (ftp)(http) BIGWIG
GSM2344259_ENCFF391AEB_plus_strand_signal_of_unique_reads_hg19.bigWig 82.9 Mb (ftp)(http) BIGWIG
GSM2344259_ENCFF428KEE_plus_strand_signal_of_all_reads_GRCh38.bigWig 90.1 Mb (ftp)(http) BIGWIG
GSM2344259_ENCFF493UGK_plus_strand_signal_of_all_reads_hg19.bigWig 89.8 Mb (ftp)(http) BIGWIG
GSM2344259_ENCFF685RDC_transcript_quantifications_hg19.tsv.gz 7.6 Mb (ftp)(http) TSV
GSM2344259_ENCFF832WTH_minus_strand_signal_of_all_reads_hg19.bigWig 86.8 Mb (ftp)(http) BIGWIG
GSM2344259_ENCFF939FQC_gene_quantifications_hg19.tsv.gz 2.5 Mb (ftp)(http) TSV
GSM2344259_ENCLB464VVH_README.txt.gz 1.2 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
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