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Sample GSM2344259 Query DataSets for GSM2344259
Status Public on Nov 08, 2016
Title total RNA-seq from tibial nerve (ENCLB464VVH)
Sample type SRA
Source name Homo sapiens tibial nerve tissue female adult (53 years)
Organism Homo sapiens
Characteristics tissue_type: tibial nerve
biomaterial_type: tissue
description: Tibial nerve tissue from received by the Gingeras lab to do RNA-Seq assay on from GTEx.
biosample encode accession: ENCBS358ZMI (SAMN05897120)
age: 53 year
dev stage: adult
donor_id: ENCDO793LXB
Sex: female
lab: Thomas Gingeras, CSHL
link: ENCBS358ZMI at ENCODE;
link: Derived from ENCODE donor ENCDO793LXB;
Extracted molecule total RNA
Extraction protocol extraction method: see document
general protocol:
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 2500
biological replicate number: 1
technical replicate number: 1
description: The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's tibial nerve tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
experiment encode accession: ENCSR858QEL
assay title: total RNA-seq
assembly: hg19, GRCh38
encode release date: 2016-02-18
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB464VVH
size range: >200
spikeins used: /references/ENCSR156CIL/
Data processing See GSM*_README.txt supplementary file linked below
Submission date Oct 13, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL16791
Series (1)
GSE88600 total RNA-seq from tibial nerve (ENCSR858QEL)
BioSample SAMN05897120
SRA SRX2244658
Named Annotation GSM2344259_ENCFF278PIM_plus_strand_signal_of_unique_reads_GRCh38.bigWig
Named Annotation GSM2344259_ENCFF390ZIX_minus_strand_signal_of_all_reads_GRCh38.bigWig
Named Annotation GSM2344259_ENCFF428KEE_plus_strand_signal_of_all_reads_GRCh38.bigWig
Named Annotation GSM2344259_ENCFF252AEW_minus_strand_signal_of_unique_reads_GRCh38.bigWig

Supplementary file Size Download File type/resource
GSM2344259_ENCFF046AFQ_gene_quantifications_GRCh38.tsv.gz 2.6 Mb (ftp)(http) TSV
GSM2344259_ENCFF252AEW_minus_strand_signal_of_unique_reads_GRCh38.bigWig 80.9 Mb (ftp)(http) BIGWIG
GSM2344259_ENCFF277KZX_minus_strand_signal_of_unique_reads_hg19.bigWig 80.7 Mb (ftp)(http) BIGWIG
GSM2344259_ENCFF278PIM_plus_strand_signal_of_unique_reads_GRCh38.bigWig 83.0 Mb (ftp)(http) BIGWIG
GSM2344259_ENCFF353BYQ_transcript_quantifications_GRCh38.tsv.gz 7.7 Mb (ftp)(http) TSV
GSM2344259_ENCFF390ZIX_minus_strand_signal_of_all_reads_GRCh38.bigWig 87.0 Mb (ftp)(http) BIGWIG
GSM2344259_ENCFF391AEB_plus_strand_signal_of_unique_reads_hg19.bigWig 82.9 Mb (ftp)(http) BIGWIG
GSM2344259_ENCFF428KEE_plus_strand_signal_of_all_reads_GRCh38.bigWig 90.1 Mb (ftp)(http) BIGWIG
GSM2344259_ENCFF493UGK_plus_strand_signal_of_all_reads_hg19.bigWig 89.8 Mb (ftp)(http) BIGWIG
GSM2344259_ENCFF685RDC_transcript_quantifications_hg19.tsv.gz 7.6 Mb (ftp)(http) TSV
GSM2344259_ENCFF832WTH_minus_strand_signal_of_all_reads_hg19.bigWig 86.8 Mb (ftp)(http) BIGWIG
GSM2344259_ENCFF939FQC_gene_quantifications_hg19.tsv.gz 2.5 Mb (ftp)(http) TSV
GSM2344259_ENCLB464VVH_README.txt.gz 1.2 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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