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Sample GSM2344250 Query DataSets for GSM2344250
Status Public on Nov 08, 2016
Title total RNA-seq from stomach (ENCLB456EOR)
Sample type SRA
Source name Homo sapiens stomach tissue female adult (51 year)
Organism Homo sapiens
Characteristics tissue_type: stomach
biomaterial_type: tissue
description: Stomach aliquot received by the Gingeras lab to conduct RNA-Seq assays on.
biosample encode accession: ENCBS038PAI (SAMN05896801)
age: 51 year
dev stage: adult
donor_id: ENCDO271OUW
Sex: female
lab: Thomas Gingeras, CSHL
link: ENCBS038PAI at ENCODE;
link: Derived from ENCODE donor ENCDO271OUW;
Extracted molecule total RNA
Extraction protocol extraction method: see document
general protocol:
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 2500
biological replicate number: 1
technical replicate number: 1
description: The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's stomach tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
experiment encode accession: ENCSR853WOM
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2016-08-04
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB456EOR
size range: >200
spikeins used: /references/ENCSR156CIL/
Data processing See GSM*_README.txt supplementary file linked below
Submission date Oct 13, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL16791
Series (1)
GSE88594 total RNA-seq from stomach (ENCSR853WOM)
BioSample SAMN05896801
SRA SRX2244651
Named Annotation GSM2344250_ENCFF440SIW_plus_strand_signal_of_all_reads_GRCh38.bigWig
Named Annotation GSM2344250_ENCFF517PFB_plus_strand_signal_of_unique_reads_GRCh38.bigWig
Named Annotation GSM2344250_ENCFF500YWQ_minus_strand_signal_of_unique_reads_GRCh38.bigWig
Named Annotation GSM2344250_ENCFF344WWU_minus_strand_signal_of_all_reads_GRCh38.bigWig

Supplementary file Size Download File type/resource
GSM2344250_ENCFF074OFV_plus_strand_signal_of_unique_reads_hg19.bigWig 19.9 Mb (ftp)(http) BIGWIG
GSM2344250_ENCFF094GQC_minus_strand_signal_of_all_reads_hg19.bigWig 21.7 Mb (ftp)(http) BIGWIG
GSM2344250_ENCFF155AGD_gene_quantifications_hg19.tsv.gz 2.5 Mb (ftp)(http) TSV
GSM2344250_ENCFF344WWU_minus_strand_signal_of_all_reads_GRCh38.bigWig 21.9 Mb (ftp)(http) BIGWIG
GSM2344250_ENCFF440SIW_plus_strand_signal_of_all_reads_GRCh38.bigWig 23.1 Mb (ftp)(http) BIGWIG
GSM2344250_ENCFF500YWQ_minus_strand_signal_of_unique_reads_GRCh38.bigWig 19.4 Mb (ftp)(http) BIGWIG
GSM2344250_ENCFF517PFB_plus_strand_signal_of_unique_reads_GRCh38.bigWig 20.2 Mb (ftp)(http) BIGWIG
GSM2344250_ENCFF617PUY_transcript_quantifications_hg19.tsv.gz 7.2 Mb (ftp)(http) TSV
GSM2344250_ENCFF645CNL_gene_quantifications_GRCh38.tsv.gz 2.6 Mb (ftp)(http) TSV
GSM2344250_ENCFF694ZJI_transcript_quantifications_GRCh38.tsv.gz 7.3 Mb (ftp)(http) TSV
GSM2344250_ENCFF696KNM_plus_strand_signal_of_all_reads_hg19.bigWig 22.3 Mb (ftp)(http) BIGWIG
GSM2344250_ENCFF836VIP_minus_strand_signal_of_unique_reads_hg19.bigWig 19.1 Mb (ftp)(http) BIGWIG
GSM2344250_ENCLB456EOR_README.txt.gz 1.2 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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