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Sample GSM2344225 Query DataSets for GSM2344225
Status Public on Nov 08, 2016
Title total RNA-seq from upper lobe of left lung (ENCLB692XZA)
Sample type SRA
Source name Homo sapiens upper lobe of left lung tissue male adult (54 years)
Organism Homo sapiens
Characteristics tissue_type: upper lobe of left lung
biomaterial_type: tissue
description: Lung tissue obtained from GTEx for the Gingeras lab to conduct RNA-Seq assays on.
biosample encode accession: ENCBS271JIM (SAMN05897040)
age: 54 year
dev stage: adult
donor_id: ENCDO451RUA
Sex: male
lab: Thomas Gingeras, CSHL
link: ENCBS271JIM at ENCODE;
link: Derived from ENCODE donor ENCDO451RUA;
Extracted molecule total RNA
Extraction protocol extraction method: see document
general protocol:
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 2500
biological replicate number: 1
technical replicate number: 1
description: The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's lung tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
experiment encode accession: ENCSR839ZDH
assay title: total RNA-seq
assembly: hg19, GRCh38
encode release date: 2016-02-18
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB692XZA
size range: >200
spikeins used: /references/ENCSR156CIL/
Data processing See GSM*_README.txt supplementary file linked below
Submission date Oct 13, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL16791
Series (1)
GSE88579 total RNA-seq from upper lobe of left lung (ENCSR839ZDH)
BioSample SAMN05897040
SRA SRX2244624
Named Annotation GSM2344225_ENCFF404VBN_minus_strand_signal_of_all_reads_GRCh38.bigWig
Named Annotation GSM2344225_ENCFF365YIZ_plus_strand_signal_of_unique_reads_GRCh38.bigWig
Named Annotation GSM2344225_ENCFF116QMF_minus_strand_signal_of_unique_reads_GRCh38.bigWig
Named Annotation GSM2344225_ENCFF570ZJA_plus_strand_signal_of_all_reads_GRCh38.bigWig

Supplementary file Size Download File type/resource
GSM2344225_ENCFF016AUE_minus_strand_signal_of_unique_reads_hg19.bigWig 51.7 Mb (ftp)(http) BIGWIG
GSM2344225_ENCFF059RIW_plus_strand_signal_of_unique_reads_hg19.bigWig 53.6 Mb (ftp)(http) BIGWIG
GSM2344225_ENCFF116QMF_minus_strand_signal_of_unique_reads_GRCh38.bigWig 52.0 Mb (ftp)(http) BIGWIG
GSM2344225_ENCFF249QYL_gene_quantifications_hg19.tsv.gz 2.5 Mb (ftp)(http) TSV
GSM2344225_ENCFF324ESX_transcript_quantifications_GRCh38.tsv.gz 7.6 Mb (ftp)(http) TSV
GSM2344225_ENCFF345UZD_plus_strand_signal_of_all_reads_hg19.bigWig 58.4 Mb (ftp)(http) BIGWIG
GSM2344225_ENCFF365YIZ_plus_strand_signal_of_unique_reads_GRCh38.bigWig 53.8 Mb (ftp)(http) BIGWIG
GSM2344225_ENCFF404VBN_minus_strand_signal_of_all_reads_GRCh38.bigWig 57.5 Mb (ftp)(http) BIGWIG
GSM2344225_ENCFF570ZJA_plus_strand_signal_of_all_reads_GRCh38.bigWig 59.1 Mb (ftp)(http) BIGWIG
GSM2344225_ENCFF595DKP_minus_strand_signal_of_all_reads_hg19.bigWig 56.9 Mb (ftp)(http) BIGWIG
GSM2344225_ENCFF678UAV_transcript_quantifications_hg19.tsv.gz 7.5 Mb (ftp)(http) TSV
GSM2344225_ENCFF808NEL_gene_quantifications_GRCh38.tsv.gz 2.6 Mb (ftp)(http) TSV
GSM2344225_ENCLB692XZA_README.txt.gz 1.1 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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