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GEO accession:
Sample GSM2192417
Query DataSets for GSM2192417
Status
Public on Jun 22, 2016
Title
ChIP-seq from intestine (ENCLB536GUT)
Sample type
SRA
Source name
Mus musculus strain B6NTac;B6NCrl/Lap intestine tissue mixed sex postnatal (0 days)
Organism
Mus musculus
Characteristics
antibody: Control
tissue_type: intestine
biomaterial_type: tissue
description: Intestine from pooled postnatal 0 day mice
biosample encode accession: ENCBS560AAA (SAMN05202034)
age: 0 day
donor_id: ENCDO469XMJ
dev stage: postnatal
Sex: pooled male and female
health state: healthy
lab: Len Pennacchio, LBNL
link: ENCBS560AAA at ENCODE;
https://www.encodeproject.org/ENCBS560AAA/
link: Derived from ENCODE donor ENCDO469XMJ;
https://www.encodeproject.org/ENCDO469XMJ/
link: excision protocol;
https://www.encodeproject.org/documents/631aa21c-8e48-467e-8cac-d40c875b3913/@@download/attachment/StandardTissueExcisionProtocol_02132017.pdf
Extracted molecule
genomic DNA
Extraction protocol
general protocol:
https://www.encodeproject.org/documents/4f73fbc3-956e-47ae-aa2d-41a7df552c81/@@download/attachment/Ren_ChIP_Library_Preparation_v060614.pdf
general protocol:
https://www.encodeproject.org/documents/3125496b-c833-4414-bf5f-84dd633eb30d/@@download/attachment/Ren_Tissue_Fixation_and_Sonication_v060614.pdf
Library strategy
ChIP-Seq
Library source
genomic
Library selection
ChIP
Instrument model
Illumina HiSeq 2000
Description
https://www.encodeproject.org/experiments/ENCSR898PML/
***************
biological replicate number: 2
technical replicate number: 1
description: Input control ChIP-seq on postnatal 0 day mouse intestine
experiment encode accession: ENCSR898PML
assay title: ChIP-seq
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB536GUT
size range: 300-500
Data processing
See GSM*_README.txt supplementary file linked below
Submission date
Jun 07, 2016
Last update date
May 15, 2019
Contact name
ENCODE DCC
E-mail(s)
encode-help@lists.stanford.edu
Organization name
ENCODE DCC
Street address
300 Pasteur Dr
City
Stanford
State/province
CA
ZIP/Postal code
94305-5120
Country
USA
Platform ID
GPL13112
Series (1)
GSE83007
ChIP-seq from intestine (ENCSR898PML)
Relations
BioSample
SAMN05202034
SRA
SRX1834357
Supplementary file
Size
Download
File type/resource
GSM2192417_ENCLB536GUT_README.txt.gz
289 b
(ftp)
(http)
TXT
SRA Run Selector
Raw data are available in SRA
Processed data not applicable for this record
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