|
| Status |
Public on Nov 20, 2022 |
| Title |
in situ Hi-C in neuron 03_L8 |
| Sample type |
SRA |
| |
|
| Source name |
iPSC derived human cortical neuron
|
| Organism |
Homo sapiens |
| Characteristics |
cell type: iPSC derived cortical neuron
disease state: non-diseased
|
| Growth protocol |
iPSC neurons were obtained from Cellular dynamics, and were harvested in post-plate day 14.
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Hi-C protocol was based on the original publication by Rao, SS et al. 2014
|
| |
|
| Library strategy |
OTHER |
| Library source |
genomic |
| Library selection |
other |
| Instrument model |
Illumina HiSeq 4000 |
| |
|
| Description |
library strategy: Hi-C
|
| Data processing |
Hi-C protocol was based on the original publication by Rao, SS et al. 2014
Hi-C: Alignment by BWA
Hi-C: TADs were called from HI-C contact maps for each chromosome
Supplementary_files_format_and_content: Hi-C: TAD coordinates
Genome_build: hg19
|
| |
|
| Submission date |
Apr 05, 2016 |
| Last update date |
Nov 20, 2022 |
| Contact name |
Jingjing Li |
| E-mail(s) |
lijj@stanford.edu
|
| Organization name |
Stanford University
|
| Street address |
3165 Porter Drive
|
| City |
Palo Alto |
| ZIP/Postal code |
94304 |
| Country |
USA |
| |
|
| Platform ID |
GPL20301 |
| Series (1) |
| GSE79965 |
Regulatory genomic profiling in pure iPSC-derived human cortical neurons |
|
| Relations |
| BioSample |
SAMN04620212 |
| SRA |
SRX1683056 |
