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Sample GSM175791 Query DataSets for GSM175791
Status Public on Apr 09, 2007
Title Breast 2 Disease
Sample type RNA
 
Source name Male/Female; Normal/Diseased
Organism Homo sapiens
Characteristics Tissue/Cell Line [C]: breast
Disease/Normal or Treatment [C]: disease
Gender: F
Disease type: Breast cancer
Treatment protocol Not treated
Growth protocol None
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol Following fragmentation, cRNA were hybridized for 16 hr at 45C on the GeneChip Human U133 plus 2.0 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
Description Disease
Data processing The data were analyzed with robust multi-array (RMA) for background correction, normalization and polishing.
 
Submission date Mar 19, 2007
Last update date Aug 28, 2018
Contact name Richard B Roth
E-mail(s) rroth@neurocrine.com
Organization name Neurocrine Biosciences, Inc.
Department Molecular Medicine
Street address 12790 El Camino Real
City San Diego
State/province CA
ZIP/Postal code 92130
Country USA
 
Platform ID GPL570
Series (1)
GSE7307 Human body index - transcriptional profiling
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF
VALUE RMA-calculated Signal intensity

Data table
ID_REF VALUE
1554096_a_at 10.796661
235618_at 36.25817
226481_at 141.66481
203075_at 178.66383
236658_at 1.4206069
212621_at 66.86237
1557720_s_at 17.086107
242882_at 30.586632
238622_at 6.2907143
1566288_at 3.3493721
223862_at 11.684713
227982_at 52.93062
235483_at 19.481503
1566114_at 1.0045419
204150_at 312.99905
201484_at 185.24765
212061_at 87.61291
210092_at 168.27011
205145_s_at 25.47028
221594_at 0.39420733

Total number of rows: 54675

Table truncated, full table size 1095 Kbytes.




Supplementary file Size Download File type/resource
GSM175791.CEL.gz 7.2 Mb (ftp)(http) CEL

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