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Sample GSM149080 Query DataSets for GSM149080
Status Public on Feb 21, 2007
Title Small RNAs from Arabidopsis AGO1 complex
Sample type RNA
 
Source name Immunopurified Arabidopsis AGO1 complex
Organism Arabidopsis thaliana
Characteristics Small RNAs that are associated with Arabidopsis AGO1 complex
Extracted molecule total RNA
Extraction protocol Small RNAs were extracted from immunopurified AGO1 complex using Trizol reagent
Label none
Label protocol none
 
Hybridization protocol none
Scan protocol none
Description Small RNAs that are associated with Arabidopsis AGO1 complex
Data processing The small RNA sequences were mapped to the Arabidopsis genome provided by TIGR (release version 5) using Perl scripts
 
Submission date Dec 07, 2006
Last update date Feb 21, 2007
Contact name Gregory J. Hannon
E-mail(s) hannon@cshl.edu
Phone 516-367-8386
Fax 516-367-8874
Organization name Cold Spring Harbor Laboratory
Lab Hannon
Street address 1 Bungtown Rd
City Cold Spring Harbor
State/province NY
ZIP/Postal code 11724
Country USA
 
Platform ID GPL4647
Series (1)
GSE6478 Small RNAs in Arabidopsis thaliana and its RISC complexes

Data table header descriptions
ID_REF Sequence of small RNA (in DNA)
VALUE Number of times small RNA was sequenced
NAME Name of small RNA in NCBI database

Data table
ID_REF VALUE NAME
GAATCTTGATGATGCTGCAT 412 AGO1_0001
TTGAAAGTGACTACATCGGGG 37603 AGO1_0002
GAATCTTGATGATGCTGCA 91 AGO1_0003
TTTGGATTGAAGGGAGCTCTA 25843 AGO1_0004
TGAAGCTGCCAGCATGATCTA 14716 AGO1_0005
TTAACCGCAACTTCTATTA 1 AGO1_0006
TCGCGATATTGGTACCTCG 1 AGO1_0007
TTGAAAGTGACTACATCGGG 1732 AGO1_0008
ATGTTTCAGTCTTATCCC 2 AGO1_0009
TGGGCATTATCACAATCACTA 3 AGO1_0010
TTAACGGTTTCTAGGTTCTA 1 AGO1_0011
AGAATCTTGATGATGCTGCAT 21821 AGO1_0012
TAAGCCTACCTGCGGTATACT 1 AGO1_0013
TTGGATGGTTTCAGGCTTCTT 5 AGO1_0014
AGAATCTTGATGATGCTGCAG 5763 AGO1_0015
TGAAAGTGACTACATCGGGGT 5332 AGO1_0016
AGAATCTTGATGATGCTGCA 4697 AGO1_0017
TGATTGAGCCGTGTCAATATC 370 AGO1_0018
TGGAGAAGCAGGGCACGTGCA 3549 AGO1_0019
TATATGTTTCAGTCTTATCCC 1247 AGO1_0020

Total number of rows: 6599

Table truncated, full table size 219 Kbytes.




Supplementary data files not provided

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