GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM146365 Query DataSets for GSM146365
Status Public on Mar 31, 2007
Title Maythorpe Root Control, biological rep 3
Sample type RNA
Source name Maythorpe Root
Organism Hordeum vulgare
Characteristics Genotype: Maythorpe

Treatment protocol control root
Growth protocol hydroponics
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
Hybridization protocol GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner
Description Gene expression data from barley root
Data processing The data were analyzed with GCOS using Affymetrix default analysis settings and global scaling as normalization method.
Submission date Nov 20, 2006
Last update date Mar 31, 2007
Contact name Harkamal Walia
Organization name University of Nebraska
Street address Agronomy and Horticulture
City Lincoln
State/province NE
ZIP/Postal code 68583
Country USA
Platform ID GPL1340
Series (1)
GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

Data table header descriptions
VALUE GCOS-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
AFFX-BioB-5_at 144 P 0.001796
AFFX-BioB-M_at 83.7 P 0.00011
AFFX-BioB-3_at 95.6 P 0.000127
AFFX-BioC-5_at 350.4 P 0.00006
AFFX-BioC-3_at 451.3 P 0.000044
AFFX-BioDn-5_at 645.3 P 0.000044
AFFX-BioDn-3_at 1884.2 P 0.00011
AFFX-CreX-5_at 3379.8 P 0.000044
AFFX-CreX-3_at 5912.2 P 0.000044
AFFX-DapX-5_at 229.5 P 0.000052
AFFX-DapX-M_at 681.2 P 0.000169
AFFX-DapX-3_at 1546.2 P 0.000044
AFFX-LysX-5_at 35.6 P 0.000581
AFFX-LysX-M_at 137.7 P 0.011384
AFFX-LysX-3_at 235.6 P 0.000052
AFFX-PheX-5_at 88.6 P 0.00011
AFFX-PheX-M_at 74.9 P 0.002556
AFFX-PheX-3_at 149.8 P 0.000052
AFFX-ThrX-5_at 97.9 P 0.000509
AFFX-ThrX-M_at 175.4 P 0.000109

Total number of rows: 22840

Table truncated, full table size 702 Kbytes.

Supplementary file Size Download File type/resource
GSM146365.CEL.gz 3.4 Mb (ftp)(http) CEL

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap