GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM146365
Query DataSets for GSM146365
Status
Public on Mar 31, 2007
Title
Maythorpe Root Control, biological rep 3
Sample type
RNA
Source name
Maythorpe Root
Organism
Hordeum vulgare
Characteristics
Genotype: Maythorpe
Treatment protocol
control root
Growth protocol
hydroponics
Extracted molecule
total RNA
Extraction protocol
Trizol extraction of total RNA
Label
biotin
Label protocol
Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
Hybridization protocol
GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol
GeneChips were scanned using the Hewlett-Packard GeneArray Scanner
Description
Gene expression data from barley root
Data processing
The data were analyzed with GCOS using Affymetrix default analysis settings and global scaling as normalization method.
Submission date
Nov 20, 2006
Last update date
Mar 31, 2007
Contact name
Harkamal Walia
Organization name
University of Nebraska
Street address
Agronomy and Horticulture
City
Lincoln
State/province
NE
ZIP/Postal code
68583
Country
USA
Platform ID
GPL1340
Series (1)
GSE6325
Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
Data table header descriptions
ID_REF
VALUE
GCOS-calculated Signal intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
144
P
0.001796
AFFX-BioB-M_at
83.7
P
0.00011
AFFX-BioB-3_at
95.6
P
0.000127
AFFX-BioC-5_at
350.4
P
0.00006
AFFX-BioC-3_at
451.3
P
0.000044
AFFX-BioDn-5_at
645.3
P
0.000044
AFFX-BioDn-3_at
1884.2
P
0.00011
AFFX-CreX-5_at
3379.8
P
0.000044
AFFX-CreX-3_at
5912.2
P
0.000044
AFFX-DapX-5_at
229.5
P
0.000052
AFFX-DapX-M_at
681.2
P
0.000169
AFFX-DapX-3_at
1546.2
P
0.000044
AFFX-LysX-5_at
35.6
P
0.000581
AFFX-LysX-M_at
137.7
P
0.011384
AFFX-LysX-3_at
235.6
P
0.000052
AFFX-PheX-5_at
88.6
P
0.00011
AFFX-PheX-M_at
74.9
P
0.002556
AFFX-PheX-3_at
149.8
P
0.000052
AFFX-ThrX-5_at
97.9
P
0.000509
AFFX-ThrX-M_at
175.4
P
0.000109
Total number of rows:
22840
Table truncated, full table size
702 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM146365.CEL.gz
3.4 Mb
(ftp)
(http)
CEL
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
