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GEO accession:
Sample GSM112754
Query DataSets for GSM112754
Status
Public on Sep 30, 2006
Title
NA19222_Nsp_EA
Sample type
genomic
Source name
DNA was obtained from NIGHS Human Genetic Cell Repository
Organism
Homo sapiens
Characteristics
Gender: Female Cell lot number: 1
Biomaterial provider
Coriell NA19222
http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA19222
Extracted molecule
genomic DNA
Label
Biotin
Description
Hapmap samples used for identifying variable copy number regions in the genome
Data processing
Genotyes reported by dynamic modeling algorithm
Submission date
Jun 05, 2006
Last update date
Apr 17, 2008
Contact name
Fan Shen
E-mail(s)
Fan_Shen@affymetrix.com
Phone
408-731-5762
Organization name
Affymetrix, Inc
Street address
3420 Central Expressway
City
Santa Clara
State/province
CA
ZIP/Postal code
95051
Country
USA
Platform ID
GPL3811
Series (1)
GSE5013
Global variation of copy number in the human genome_EA
Data table header descriptions
ID_REF
Affymetrix probe set ID
VALUE
Genotype call
DETECTION P-VALUE
Detection pValue
MedianS
Median signal
RAS1
Relative allele signal for data in the first probe group
RAS2
Relative allele signal for data in the second probe group
Data table
ID_REF
VALUE
DETECTION P-VALUE
MedianS
RAS1
RAS2
SNP_A-1825791
AA
0.023438
9.023
0.898496
0.993708
SNP_A-2222671
AA
0.007813
18.351
0.899237
1.000000
SNP_A-1879718
AB
0.039063
11.142
0.348652
0.308802
SNP_A-2192013
BB
0.007813
24.460
0.010700
0.000000
SNP_A-2161785
AA
0.015625
9.440
0.980328
0.906439
SNP_A-1924692
AB
0.187500
9.764
0.353519
0.265840
SNP_A-2059484
AA
0.007813
18.895
0.935216
1.000000
SNP_A-1921272
AB
0.007813
6.854
0.463007
0.437346
SNP_A-2045948
BB
0.093750
6.065
0.243902
0.132629
SNP_A-2024190
AA
0.015625
11.602
1.000000
1.000000
SNP_A-2166839
AB
0.039063
7.320
0.774304
0.705907
SNP_A-1999651
BB
0.007813
9.051
0.059603
0.099462
SNP_A-2049421
BB
0.007813
17.227
0.082459
0.000000
SNP_A-2220047
BB
0.046875
5.624
0.000000
0.146357
SNP_A-1916560
AB
0.007813
13.565
0.446209
0.488347
SNP_A-2094813
AB
0.007813
10.450
0.508472
0.499463
SNP_A-2190792
AA
0.250000
6.005
0.905258
0.720725
SNP_A-2033074
AB
0.023438
11.552
0.673858
0.639731
SNP_A-2131660
BB
0.039063
8.304
0.329082
0.000000
SNP_A-1780523
AB
0.007813
14.297
0.377915
0.401286
Total number of rows:
267231
Table truncated, full table size
13218 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM112754.CEL.gz
43.4 Mb
(ftp)
(http)
CEL
GSM112754_raw.txt.gz
26.3 Mb
(ftp)
(http)
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